Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1026 ATGGAAAGCGTGCCTGCGCCTTCAGTTTCCAACGAACGAGTCGCTTACAAGCTCAAAGGTTACTTCGATTTGGCCAAGGAAGAGATTGCCAAGGCTGTTAGGGCCGAAGAGTGGGGCTTGGTCGATGATGCTGTTCTTCATTACAAGAACGCCCAGCGGATTTTGATCGAAGCCAATTCAACTAGTGCGCCTTCCTTTATCACTTCGAGTGAACAAGAGAAAGTGAAATCTTATCGTCAAAAAATATCAAAATGGCAGGGTCAAGTTTCTGAGAGATTACAGATTCTAAGTAGACGAGCAGGTAGCACATCCACTAATCAGAGAACCTCAACTCATGGACACACTACTGCAGTTCCGTTTACACCGTCAAATGCTAGAAGAAATGCATTACAAAAGAATCCTCAAAGAACAAGTCAAATGGACAAAGATGTAAAGCCGAAATCTAGTCAGACATCTGGTGCAAATTATGATACAAAATTGGTTGAAACTATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATGTTGCTGGTCTTGAGAAGGCGAAGCAAGCTTTAATGGAAATGGTTATTTTGCCAACTAAGAGAAGAGATTTGTTCACTGGTCTTCGAAGGCCGGCTAGAGGTTTGCTTCTCTTTGGTCCGCCTGGTAATGGAAAAACCATGCTTGCCAAAGCAGTGGCTTCAGAATCAGAAGCAACATTTTTTACTGTATCTGCAGCTTCGTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACTCTATTCATGGTAGCTATATCCAGGCAACCATCTGTGATTTTCATTGATGAGATTGATAGTATTATGTCAACAAGGTTGGCTAATGAGAATGATGCAAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGACGGGGTGACCTCCAATCCGAATGATATTGTAATTGTCATTGGTGCTACCAATAAGCCACAAGAATTAGATGATGCAGTTCTTAGGAGACTGGTGAAGAGAATATACATACCTTTACCTGATGAAAATGTCCGGAGACGTCTATTAAAACACAAACTCAAGGATCAAGCATTCTCCTTACCCAGTAGAGATCTAGAAAGGCTTGCAAAAGAGACTGAAGGATATTCTGGAAGCGATCTACAAGCCTTGTGTGAAGAAGCAGCACTGATGCCGATTAGAGAGCTGGGTTCTGACATTCTCACTGTTAAGGCAAATCAGGTAAGAGGACTGAGATATGATGATTTTAAGAATGCAATGGCTGTCATTAGACCAAGCTTAAATAAAAGAAAGTGGGAAGAGCTTGAGCGCTGGAATGAGGAGTTTGGCTCTAACTGA 1350 0.4193 MESVPAPSVSNERVAYKLKGYFDLAKEEIAKAVRAEEWGLVDDAVLHYKNAQRILIEANSTSAPSFITSSEQEKVKSYRQKISKWQGQVSERLQILSRRAGSTSTNQRTSTHGHTTAVPFTPSNARRNALQKNPQRTSQMDKDVKPKSSQTSGANYDTKLVETINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFTVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPNDIVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENVRRRLLKHKLKDQAFSLPSRDLERLAKETEGYSGSDLQALCEEAALMPIRELGSDILTVKANQVRGLRYDDFKNAMAVIRPSLNKRKWEELERWNEEFGSN 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1026 449 Gene3D - 10 100 - -
Glsi06g1026 449 SMART smart 18 95 IPR007330 -
Glsi06g1026 449 Gene3D - 173 443 IPR027417 -
Glsi06g1026 449 ProSitePatterns AAA-protein family signature. 316 335 IPR003960 GO:0005524|GO:0016887
Glsi06g1026 449 Gene3D - 345 427 - -
Glsi06g1026 449 FunFam Spastin, putative 173 372 - -
Glsi06g1026 449 CDD MIT_spastin 18 96 - -
Glsi06g1026 449 FunFam AAA-type ATPase family protein 345 427 - -
Glsi06g1026 449 SMART AAA_5 210 346 IPR003593 GO:0016887
Glsi06g1026 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 446 IPR027417 -
Glsi06g1026 449 PANTHER AAA DOMAIN-CONTAINING 71 448 - -
Glsi06g1026 449 FunFam AAA-type ATPase family protein 11 100 - -
Glsi06g1026 449 MobiDBLite consensus disorder prediction 99 154 - -
Glsi06g1026 449 Pfam AAA+ lid domain 369 400 IPR041569 -
Glsi06g1026 449 MobiDBLite consensus disorder prediction 99 137 - -
Glsi06g1026 449 CDD RecA-like_spastin 179 342 - -
Glsi06g1026 449 Pfam ATPase family associated with various cellular activities (AAA) 214 344 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1026 Glsi-ChrGlsi06 13639940 13659009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1026 155 399 Calmodulin-binding Proteins AT3G56690 41.339 3.63e-49 178