Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0988 ATGGTAAGAGGGAAGACTCAGATGAGGCGTATAGAGAACGCCACAAGCAGGCAGGTCACCTTCTCAAAACGCCGTAATGGGCTGCTGAAGAAGGCTTTTGAACTATCAGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCCCCAGAGGGAAGCTCTACGAATTTGCAAGCTCCGGCATGCAGGAGACAATTGAACGCTACCGTCGTCATACCAGGGATAGTCAATTAGCCAACAGATCACGTGAACAAAATATGCAGCATTTGAAGCAAGAAGCAGCAGGCATGATGAAGACAATAGAGCTTCTTGAAGTTTCAAAACGGAAACTCTTGGGAGAAGGCTTAGGGTCCTGCTCCGTAGAAGAGTTGCAAGAGATAGAACAACAGTTGGAGAAGAGTGTAAGCCGCATTCGAGCAAAGAAGTCTCAGGTTTTTAAGGAACAAATTGAGCAACTAAAAGGAAAGGAAAAAGCCCTAACAGCTGAAAATGCAAGGCTCGCCGAGAAGTATGAGATACAGCTACAGAGAGCAGCAACAAAAGAGCAGAAAGAAAATCCAGTCTACGCAGAAAGTAGTCCAAGTTCAGATGTTGAAACCGAGTTGTTCATTGGACCACCAGAAACAAGAACAATAAGACGCATTCCTCCTCCTCCTCCTTCACCCCCTCATGTCTAA 678 0.4572 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSGMQETIERYRRHTRDSQLANRSREQNMQHLKQEAAGMMKTIELLEVSKRKLLGEGLGSCSVEELQEIEQQLEKSVSRIRAKKSQVFKEQIEQLKGKEKALTAENARLAEKYEIQLQRAATKEQKENPVYAESSPSSDVETELFIGPPETRTIRRIPPPPPSPPHV 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0988 225 FunFam MADS-box protein SOC1 14 95 - -
Glsi06g0988 225 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi06g0988 225 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi06g0988 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Glsi06g0988 225 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Glsi06g0988 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi06g0988 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi06g0988 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi06g0988 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi06g0988 225 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Glsi06g0988 225 MobiDBLite consensus disorder prediction 178 225 - -
Glsi06g0988 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi06g0988 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi06g0988 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi06g0988 225 Coils Coil 121 170 - -
Glsi06g0988 225 MobiDBLite consensus disorder prediction 211 225 - -
Glsi06g0988 225 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0988 Glsi-ChrGlsi06 12402143 12421863 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0988 1 158 MADS-box Gene Family AT2G45660 79.747 1.50e-87 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi06g0988 K-box 1.2e-26 No_clan