Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0987 ATGGTAAGAGGGAAGACTCAGATGAGGCGTATAGAAAATGCCACAAGCAGGCAGGTCACCTTCTCAAAACGCCGTGATGGGCTGCTGAAGAAGGCTTTTGAACTATCAGTTCTTTGTGATGTTGAGGTTGCTCTCACCATCTTCTGTCCCAGAGGGAATCTCTACGAATTTGCAAGCTCCAGCATGCAGGAGATAATTGAACGCTACCTTAGGCATACTGGGGATACTCAATTAGCCAGCAGATCACTTGAAAAACATATGCAGCATTTGAAGCAAGAAGCAGCAAGCATGATGAAGAAAAAAGAGCTTCTTGAAGTTTCAAAACGGAAACTCTTGGGAGAATGCTTAGGATCATGCTCCATAGAAGAGTTGCATGAGATAGAGCAACAGTTGGAGAAGAGTGTAAGCAACATTCGAGCAAGGAAGACTCAGCTTTTCAAGGAACAGATTGAGCAACTCAAAGAAAAGGTAAGCTGA 477 0.4382 MVRGKTQMRRIENATSRQVTFSKRRDGLLKKAFELSVLCDVEVALTIFCPRGNLYEFASSSMQEIIERYLRHTGDTQLASRSLEKHMQHLKQEAASMMKKKELLEVSKRKLLGECLGSCSIEELHEIEQQLEKSVSNIRARKTQLFKEQIEQLKEKVS 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0987 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi06g0987 158 Coils Coil 121 141 - -
Glsi06g0987 158 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Glsi06g0987 158 Coils Coil 80 107 - -
Glsi06g0987 158 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi06g0987 158 Pfam K-box region 84 157 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi06g0987 158 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Glsi06g0987 158 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Glsi06g0987 158 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi06g0987 158 ProSiteProfiles K-box domain profile. 87 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi06g0987 158 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 152 - -
Glsi06g0987 158 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Glsi06g0987 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi06g0987 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi06g0987 158 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi06g0987 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0987 Glsi-ChrGlsi06 12147941 12173232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0987 1 157 MADS-box Gene Family AT2G45660 76.433 2.25e-82 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi06g0987 K-box 3.1e-22 No_clan