Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0981 ATGGTAAGAGGGAGGACTCAGATGAGGCGTATAGAGAACGCCACAAGCAGGCAGGTCACCTTCTCAAAACGCCGTAATGGGTTGCTGAAGAAGGCTTTTGAACTATCAGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCCCGAGAGGGAAGCTCTACGAATTTGCAAGCTCCAGATTTGTGTACGTGCTTTTACACCATTTAGAGTTCAGTAGTGAAGATTTTCTTCAAACCCAGAAAGGAGATCTTGACACTTTGCTATGA 270 0.4519 MVRGRTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSRFVYVLLHHLEFSSEDFLQTQKGDLDTLL 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0981 89 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi06g0981 89 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi06g0981 89 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi06g0981 89 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi06g0981 89 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi06g0981 89 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Glsi06g0981 89 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Glsi06g0981 89 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Glsi06g0981 89 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Glsi06g0981 89 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi06g0981 89 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Glsi06g0981 89 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0981 Glsi-ChrGlsi06 11765280 11765810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0981 1 60 MADS-box Gene Family AT2G45660 93.333 2.39e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi06g0981 SRF-TF 1.3e-27 No_clan