Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0980 ATGACAATAAATAAAGGCAACGACGACAATGATGCGTTTTCGTTTCCTCATTGGCGCACTTTGTACGTTATTGTACGGACGAAGTTGACGTGCTCAAACCTAGCTGCTTCTAGCTGCTTTCTGGGTCTTCCATATTCTTCAAGGTCTCGCTTGGGAAGGCTTGGATCTGCAGGAAATTGTCTTATCTTGGCATCTTTTTCTTCCTCTCTATATATCTCACCAGAAAGCTTTCTGAGTTTTTCCCACTTGATAGAGATGGTAAGAGGGAAGACTCAGATGAGGCGTATAGAGAACGCCACAAGCAGGCAGGTCACCTTCTCAAAACGCCGTAATGGACTGCTGAAGAAGGCTTTTGAACTATCAGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCCCCAGAGGGAAGCTCTACGAATTTGCAAGACCCGGCATGCAGGAGACGATTGAACGCTACCGTAGGCATACCGGGGATACTCAATTAGCCAACAGATCACTTGAACAAAATATACAGCATTTGAAGCAAGAAGCAGCAAGCATGATGAAGAAAATAGACCTTCTTGAAGTTTCAAAACGGAAACTCTTGGGAGAATGCTTAGGGTCATGTTCCATAGAAGAGTTGCATGAGATAGAGCAACAGTTGGAGAAGAGTGTAAGCAACGTTCGAGCAAGGAAGATTCAGGTTTTCAAGGAACAGATTGAGCAACTAAAGGAAAAGGAAAAAGCCCTAGGAGTTGAAAATGCAAGGATGGCTGAGAAGGAAAAAGCCCTAGGAGTTGAAAATGCAAGGATGGCTGAGAAGGAAAAAGCCCTAGGAGTTGAAAATGCAAGGATGACTGAGAAGTATGGGATCCAGCTACAGAAAGCAGCAACAAAAGAGCAGAAAGAAAATGCAGTCTACGCAGAAAGTAGTCCAAGTTCCGGTGTGGAAACTGAGTTGTCCATCGGACCACCAGAAACAAGAACAATAAGACGCGTTCCTCCTCCTCATCCACCTCCTCATTTCTAA 1014 0.4448 MTINKGNDDNDAFSFPHWRTLYVIVRTKLTCSNLAASSCFLGLPYSSRSRLGRLGSAGNCLILASFSSSLYISPESFLSFSHLIEMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFARPGMQETIERYRRHTGDTQLANRSLEQNIQHLKQEAASMMKKIDLLEVSKRKLLGECLGSCSIEELHEIEQQLEKSVSNVRARKIQVFKEQIEQLKEKEKALGVENARMAEKEKALGVENARMAEKEKALGVENARMTEKYGIQLQKAATKEQKENAVYAESSPSSGVETELSIGPPETRTIRRVPPPHPPPHF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0980 337 SMART madsneu2 86 145 IPR002100 GO:0003677|GO:0046983
Glsi06g0980 337 Coils Coil 165 192 - -
Glsi06g0980 337 Coils Coil 206 226 - -
Glsi06g0980 337 MobiDBLite consensus disorder prediction 299 315 - -
Glsi06g0980 337 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 95 142 IPR002100 GO:0003677|GO:0046983
Glsi06g0980 337 FunFam MADS-box protein SOC1 99 180 - -
Glsi06g0980 337 ProSiteProfiles K-box domain profile. 172 262 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi06g0980 337 SUPERFAMILY SRF-like 88 162 IPR036879 GO:0003677|GO:0046983
Glsi06g0980 337 Gene3D - 98 185 IPR036879 GO:0003677|GO:0046983
Glsi06g0980 337 PRINTS MADS domain signature 108 123 IPR002100 GO:0003677|GO:0046983
Glsi06g0980 337 PRINTS MADS domain signature 88 108 IPR002100 GO:0003677|GO:0046983
Glsi06g0980 337 PRINTS MADS domain signature 123 144 IPR002100 GO:0003677|GO:0046983
Glsi06g0980 337 ProSitePatterns MADS-box domain signature. 88 142 IPR002100 GO:0003677|GO:0046983
Glsi06g0980 337 PANTHER SERUM RESPONSE FACTOR HOMOLOG 88 263 - -
Glsi06g0980 337 ProSiteProfiles MADS-box domain profile. 86 146 IPR002100 GO:0003677|GO:0046983
Glsi06g0980 337 Pfam K-box region 169 255 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi06g0980 337 Coils Coil 228 255 - -
Glsi06g0980 337 CDD MADS_MEF2_like 88 160 IPR033896 GO:0000977|GO:0045944
Glsi06g0980 337 MobiDBLite consensus disorder prediction 297 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0980 Glsi-ChrGlsi06 11692086 11723962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0980 86 243 MADS-box Gene Family AT2G45660 77.215 2.64e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi06g0980 K-box 1.2e-24 No_clan