Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0979 ATGAAAAGAATAAAGTTCGTGGACTCAATGGTAGCTGTAGTACCGGATGAGTGGACTCTGGCTAAGATAAGGATGTGGTCTATCAGTCGGATTGTTCTCAGTTCGATACTGCACAGGATGGATATAAAGGCGGCGAGAACTGAAGGTTTTTATGGCCAAACCTGCGCATATTGGCTTGCTGGGAGATGCAACAGAAAGCATTGTAGGTTTTCACACAAACTACCATCAGTACCACCTACTACTTATATTTATGGGAGGCAGTCCCATTGCTTTTCTGAGAAGAAGCACGCGTATAATGCAAAGGACTTATCAGTTAAGAAGAATGGAGGAGATGGGACAAGCTCCTCTAAGGCTAGTCATAAGTCATCACTAAGTGTCTGTAAATACTGGATGAATGGAAATTGCATACACGGGGATCAGTGCTGGAACTTGCATTCATTGTTTCAAGGGGATGGGTTCTCAATGTTAACTAAGCTACATGAACACAAGAAGATTGTCACTGGGATTGCACTTCCGGTTGGATCGGACAAACTTTTCTCTGGCAGCACTGACGGCACAGTTTGCTTATGGGACTGCCATACTGGTAAATGTTCTAATGTGATGAATGTTGGTGGTGAAGTTAGATCTTTGATCAGAGAGGGCCCTTGGGTGTTTGCTGGTGTGTCGAATGCTGTTAAAGCTTGGAACATTCAGACAGCTGCTGAGTTTACTCTTGATGGACCTAAGGGGCAAGTGTTTTCCATGGTTGTCAGCACTGATACACTTTTTGCGGGTGCAAAGGATGGTGTTATATATGCATGGAGAGGCAGTTCTGAAACAAACTCACCATTTGCACCGGTGGCATCACTAAGTGGCCACACTAGAGCAGTGGTTTGCCTAACTATTGGACGCATGAAGCTGTACTCAGGTTCCATGGATCATACCATAAAGGTTTGGGACCTTGACACATTACAGTGTACAATGACACTTAAGGGGCACACAGATGTAGTGACATCCCTTATCTGTTGGGATGAGTATTTGTTATCAAGTTCATTGGACGGCACAGTTAAGATCTGGGTGGCCACTGAAAGTGGAAATTTGGAAGTAACATATACACACCATGAAGAAAATGGTGTTGTTGCACTTGGCGGGATGACTGATCCTGAAGGAAAACACATTTTGTTTTGTTCGTGCAATGACCATTCAGTTCGCCTGTATGAACTGCCATCATTTGCTCTGAGAGGATGCCGATCCATTGCTTTGATGGTGAGGGCAACTCTTGTACCTTTAGTGGCTATAAGGTATCATATATTGCTGTCATTAGAATATGCTTGGAACATTCAGACAGCAGCTGAGTTTACTCTTGATGGACCTAAGGGACAAGTGTTTTCCATGGTTGTCAGCAATGATACACTTTTTGCGGGTGCAAAGGTTTGGGACCTTGACACATTACAGTGTACAATGACACTTAAGGGGCACACAGATGTAGTGACATCCCTTATCTGTTGGGATGAGTATTTGTTATCAAGTTCATTGGACGGCACAGTTAAGATCTGGGCTGCCACTGAAAGTGGAACTTTGGAAGTAACATATACACACCATGAAGAAAATGGTGTTGTTGCACTTGGCGGGATGACTGATCCTGAAGGAAAACACATTCTGTTTTGTTCGTGCAATGACCATTCAGTTCGCCTGTATGAACTGCCATCATTTGCTCTGAGAGGTCGACTATTCTCAAAGCAGGAAATACGAGCTATTGAAGTAGGTCCAGATGGTCTCTTTTTCACTGGAGACGGCACTGGTTTGTTGACAGTTTGGAAATGGTGGAGTGTTGTGAAGTTTGGCCGATCCAAATCATATCGGTCTAAGCTCCTTCTTCTTCTCCTTCCATCCATACCCACAATGGCGGACCATGGCGTTACCACCCCTCTCCTTTCTTCCCAACCCTCCGACCAGGTTGTTCTGACGGTACGCGATGATGATGACTCCACTTCAGAGCCTATCCTTTCATCGACCGAATCCAACGGTGGAAATAACAGTCGCAATCGCCGTCACAATCACCGGTCTCGGAATGAGATCCAATTGGGTTCTTGCAACGCATTTCGATCTCTTGGGTGCGAGGTGTTCGACGTGCCTCCGCCCACCACGGTGGACCCGTTTCGTAATAACACCCTCAAAATTGATGGGGTCTACGAGTGGTTCAAGATCGTTGTTTGTTTGCCGATTGCCTTGGTTCGTCTTGTTATCTTTGGGCTGTGTTTGCTGATCGGGTATATCGCGACGAAATTGGCTCTTCAAGGATGGAAGGATAGGCAGAACCCGATGCCGAGGTGGAGATGTAGGCTCATGTGGATCACCAGAATGTGCGCCCGCTGCATTCTCTTTTCTTTTGGCTATCATTGGATAAAACGGAGGGGAAGACCTGCACCAAGGGAAACTGCTCCTATAATTGTGTCTAATCATGTATCTTACATTGAGCCTATCTTTTATTTCTATGAATTATTTCCTACCATGGTGGCATCTGAGTCCCATGACTCCCTACCTTTCGTTGGCACCATTATCAGGGCAATGCAGGTAATATACGTCAATAGGTTCTCACCATCGTCAAGGAAGCAGACTGTAAAAGATATAAAGAGAAGGGCTTCTTGCAATAGATTTCCTCGTGTACTATTATTTCCAGAGGGAACCACAACTAATGGCAGGAATCTCATCTCCTTTCAACTTGGTGCATTTATTCCTGGTTACCCAATCCAGCCTGTAGTAGCTCGCTATCCTCATGTGCACTTTGACCAGTCATGGGGACATGTATCTTTGGCAAGGCTCATGCTCAGGATGTTCACTCAGTTCCACAATTTCTTTGAGGTAGAATACCTTCCTGTCATTTCACCCTTGGATGATAAAAAGGAAACTGCTTCACATTTTGCTGAGAGGACCAGCCGTGCTCTAGCAACTGCACTGAATACTGTGCAAACAGGACATTCTTATGGAGACTTGATGCTTTATACGAAAGCACATGAGGCGAAACAGGAGAACCCCTCAAGTTATATGGTTGAAATGGCTAAAATGGAATCATTATTCCGTATAAGCAGCACGGAAGCCGTGGAATTACTGGATAAATTTCTGTCTATGAATCCTGATCCCAGTGGTCGTGTTCAATATCATGACTTCTTGAAGGTTTTAGGACTTAAGGCTTGCCCTCTATCTGAAGAGATTTTCACATTCATTGATGTTGAGAAGAGTGGCACAATCACATTCAGACAGTTCTTATATAAATCTGCACAAGTCATGAAGCAGCCATTGTTCAATCGAGCCTGTGAATTAGCTTTTACTGAGTGTGGGAATGCAGTAAAGGACTACATAGTAGAACAAGATTTACTTGATTCCGTCCGACCTGTTATCCCGGGCTGGAAGGAGGATGAGGTTCATCAGCTGTTTGTCTTATTTGATACCGATAATGATGGGAGAGTAAGCAAGGATGATTTTCTTTCATGCCTCAGAAAAAATCCTCTGCTCATAGCACTTTTTACACCTCATCTGGAGCAGAAAAATTTGTTAGGTGGTACTGGGTCTGAGGAGATATTATGA 3564 0.4436 MKRIKFVDSMVAVVPDEWTLAKIRMWSISRIVLSSILHRMDIKAARTEGFYGQTCAYWLAGRCNRKHCRFSHKLPSVPPTTYIYGRQSHCFSEKKHAYNAKDLSVKKNGGDGTSSSKASHKSSLSVCKYWMNGNCIHGDQCWNLHSLFQGDGFSMLTKLHEHKKIVTGIALPVGSDKLFSGSTDGTVCLWDCHTGKCSNVMNVGGEVRSLIREGPWVFAGVSNAVKAWNIQTAAEFTLDGPKGQVFSMVVSTDTLFAGAKDGVIYAWRGSSETNSPFAPVASLSGHTRAVVCLTIGRMKLYSGSMDHTIKVWDLDTLQCTMTLKGHTDVVTSLICWDEYLLSSSLDGTVKIWVATESGNLEVTYTHHEENGVVALGGMTDPEGKHILFCSCNDHSVRLYELPSFALRGCRSIALMVRATLVPLVAIRYHILLSLEYAWNIQTAAEFTLDGPKGQVFSMVVSNDTLFAGAKVWDLDTLQCTMTLKGHTDVVTSLICWDEYLLSSSLDGTVKIWAATESGTLEVTYTHHEENGVVALGGMTDPEGKHILFCSCNDHSVRLYELPSFALRGRLFSKQEIRAIEVGPDGLFFTGDGTGLLTVWKWWSVVKFGRSKSYRSKLLLLLLPSIPTMADHGVTTPLLSSQPSDQVVLTVRDDDDSTSEPILSSTESNGGNNSRNRRHNHRSRNEIQLGSCNAFRSLGCEVFDVPPPTTVDPFRNNTLKIDGVYEWFKIVVCLPIALVRLVIFGLCLLIGYIATKLALQGWKDRQNPMPRWRCRLMWITRMCARCILFSFGYHWIKRRGRPAPRETAPIIVSNHVSYIEPIFYFYELFPTMVASESHDSLPFVGTIIRAMQVIYVNRFSPSSRKQTVKDIKRRASCNRFPRVLLFPEGTTTNGRNLISFQLGAFIPGYPIQPVVARYPHVHFDQSWGHVSLARLMLRMFTQFHNFFEVEYLPVISPLDDKKETASHFAERTSRALATALNTVQTGHSYGDLMLYTKAHEAKQENPSSYMVEMAKMESLFRISSTEAVELLDKFLSMNPDPSGRVQYHDFLKVLGLKACPLSEEIFTFIDVEKSGTITFRQFLYKSAQVMKQPLFNRACELAFTECGNAVKDYIVEQDLLDSVRPVIPGWKEDEVHQLFVLFDTDNDGRVSKDDFLSCLRKNPLLIALFTPHLEQKNLLGGTGSEEIL 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0979 1187 ProSiteProfiles EF-hand calcium-binding domain profile. 1129 1164 IPR002048 GO:0005509
Glsi06g0979 1187 CDD LPLAT_LPCAT1-like 783 992 IPR045252 GO:0008374
Glsi06g0979 1187 CDD WD40 236 560 - -
Glsi06g0979 1187 SMART plsc_2 808 918 IPR002123 GO:0016746
Glsi06g0979 1187 SUPERFAMILY CCCH zinc finger 121 146 IPR036855 GO:0046872
Glsi06g0979 1187 Gene3D - 1002 1179 - -
Glsi06g0979 1187 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 283 316 - -
Glsi06g0979 1187 ProSitePatterns EF-hand calcium-binding domain. 1142 1154 IPR018247 -
Glsi06g0979 1187 Gene3D - 436 635 IPR015943 GO:0005515
Glsi06g0979 1187 ProSiteProfiles Zinc finger C3H1-type profile. 49 75 IPR000571 GO:0046872
Glsi06g0979 1187 ProSiteProfiles Trp-Asp (WD) repeats profile. 483 522 IPR001680 GO:0005515
Glsi06g0979 1187 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 764 982 - -
Glsi06g0979 1187 Gene3D - 146 271 IPR015943 GO:0005515
Glsi06g0979 1187 Pfam Acyltransferase 802 905 IPR002123 GO:0016746
Glsi06g0979 1187 ProSitePatterns Trp-Asp (WD) repeats signature. 300 314 IPR019775 -
Glsi06g0979 1187 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 352 IPR001680 GO:0005515
Glsi06g0979 1187 PANTHER - 108 408 IPR044715 -
Glsi06g0979 1187 SUPERFAMILY EF-hand 1014 1172 IPR011992 -
Glsi06g0979 1187 SMART WD40_4 441 473 IPR001680 GO:0005515
Glsi06g0979 1187 SMART WD40_4 231 268 IPR001680 GO:0005515
Glsi06g0979 1187 SMART WD40_4 316 353 IPR001680 GO:0005515
Glsi06g0979 1187 SMART WD40_4 276 313 IPR001680 GO:0005515
Glsi06g0979 1187 SMART WD40_4 517 560 IPR001680 GO:0005515
Glsi06g0979 1187 SMART WD40_4 357 400 IPR001680 GO:0005515
Glsi06g0979 1187 SMART WD40_4 476 513 IPR001680 GO:0005515
Glsi06g0979 1187 SMART WD40_4 563 600 IPR001680 GO:0005515
Glsi06g0979 1187 SMART WD40_4 152 191 IPR001680 GO:0005515
Glsi06g0979 1187 PRINTS G protein beta WD-40 repeat signature 300 314 IPR020472 -
Glsi06g0979 1187 PRINTS G protein beta WD-40 repeat signature 178 192 IPR020472 -
Glsi06g0979 1187 PRINTS G protein beta WD-40 repeat signature 500 514 IPR020472 -
Glsi06g0979 1187 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 322 IPR001680 GO:0005515
Glsi06g0979 1187 SMART c3hfinal6 50 74 IPR000571 GO:0046872
Glsi06g0979 1187 SMART c3hfinal6 121 147 IPR000571 GO:0046872
Glsi06g0979 1187 ProSiteProfiles Trp-Asp (WD) repeats profile. 159 200 IPR001680 GO:0005515
Glsi06g0979 1187 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 176 602 IPR011047 -
Glsi06g0979 1187 Pfam EF-hand domain pair 1130 1160 IPR002048 GO:0005509
Glsi06g0979 1187 Pfam WD domain, G-beta repeat 279 313 IPR001680 GO:0005515
Glsi06g0979 1187 Pfam WD domain, G-beta repeat 478 512 IPR001680 GO:0005515
Glsi06g0979 1187 Pfam WD domain, G-beta repeat 318 352 IPR001680 GO:0005515
Glsi06g0979 1187 Pfam WD domain, G-beta repeat 156 191 IPR001680 GO:0005515
Glsi06g0979 1187 Gene3D - 272 411 IPR015943 GO:0005515
Glsi06g0979 1187 Gene3D - 51 145 - -
Glsi06g0979 1187 SMART efh_1 1133 1161 IPR002048 GO:0005509
Glsi06g0979 1187 SMART efh_1 1060 1088 IPR002048 GO:0005509
Glsi06g0979 1187 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 159 191 - -
Glsi06g0979 1187 ProSiteProfiles Zinc finger C3H1-type profile. 121 148 IPR000571 GO:0046872
Glsi06g0979 1187 MobiDBLite consensus disorder prediction 654 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0979 Glsi-ChrGlsi06 11631815 11659045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0979 758 994 Acyl Lipid Metabolism Gene Families AT1G80950 31.955 3.55e-34 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi06g0979 Acyltransferase 2.2e-12 CL0228