Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0963 ATGGAAAATTCTGCAACAACTCACATCGCCTGGCCACTATTGAGCTGGAGGCAAAACTTCAAAACTGGTGTGCTTGCTTTGCTGCCATTGTTTCTGCAAAGAAGGCCTATGTTGAAGCTCTTTATGGATGACTATCCAAGTTCACTGTCAGTGAAGTTAAAATCTTCCCTTGGGGAAGGGAAGGAGCTACGACAGAAGAGGAAGGTTGATGAACTTGCCAAATATGTTAATAGCAGAGTTATTGCTTTTCAGAGGATAGAAAGTAGGATTCTTGTATCAGAGCCCTCTAAACAAGAGGCTGAGGAAAATGTGCGTAGTCGAATTCAATATTTGTCAAAGAGGAAAGATCTTTTAGAGATATCTAAGAGGAGACTAGATGCAAAGAAGGCAAAGCACCACGCTAGACCTGTGAACATAAATTCTCAATGCAGGCACGACGATCATATAAGCACTGTGCCAACAATAATCATCTTTTGTGTTGCTCTTAATATTGCAATCTGCGTTATCCACTTTTGTTTGAGAATGGATATAAAGGCACAGAGAACTGAAGTTTCCTATGGAATCTGCAAATACTGGCTTGCCGGGAGATGCAACAGAAAGCATTGTAGGTATTTACACAAACTAACCCCAGGGTCACCTACTGCTTATCAATATCGGAGGCAGTCGCATTGGTTTGCTGAGAAGAAACCTAAGAACGATGTGAAAGACTTGTTAGTTAAGAAGAGCGGAGGAGATGGGACAAGCTCCTCTAAGGCTAGTGAGAAGTCATCACAAAGTATTTGTAAATACTGGATGAATGGCAATTGTGTACATGGTGACCAGTGCTGGAACTTGCATGCATGGTTTCAGGGCGATGGGTTTTCAACGCTAGCTAAGCTATGTGAGCACAAGAAGATTATCACTGGGATTGCACTTCCTGTTGGATCAGACAAACTTTTCTCTGGCAGCACTGATGGGACAGTTCGGTTATGGGACTGCCATACTGGTCAATGTTCTAATGTGATAAATCTTGGTAGTGAAGTAAGGTCTTTGATCAGTGAGGGACCTTGGGTGTTTGCTGGTGTGCTGAATGCTGTTAAAGTTTTTAACACTCAAACAGCTGCTGAGTTTTCTCTTGATGGACCTAAGGGGCAAGTCTTTTCCATGGTTGTCGGCAATGACACACTTTTTGCCGGTGCAAAGGATGGTGCTATATATGCATGGAGAGGTAGTTCTGAAAAAAACTCTCCATTTGCACCGGTAGCATCACTAAGTGGCCACACTAGAGCTGTGGTTTGCCTAACTGTTGGACGCAAGAAGCTGTACTCAGGTTCCATGGATCATACCATAAAGGTTTGGGACCTGGACACATTACAGTGTACTATGACGCTTAAGGAGCACACTAGTGTAGTGACATCGCTTATTTGTTGGGATCAGTATTTGTTATCAAGTTCACTGGACGGCACTGTTAAGATATGGGCTGCCACTGACAGGGGAACTTTGGAAGTAATATATACACACCATGAAGAGAATGGTGTTGTTGCACTTGGTGGTATGACTGATCCGGAAGGAAAACGCATTCTGTTTTGCTCTTGCAATGACCATTCAGTTCGCCTATATGAACTGCCATCATTTGCTCTGAGAGGCCAGTTATTCTCGAAACAAGAAGTGCGAACAATTGAAGTAGCTCCTGGTGGCCTCTTTTTCACAGGAGATGGGACTGGTTTGTTGACAGTTTGGAAATGGTTAGCAGAGCCGAAGATGGCAACTTCATGA 1755 0.4336 MENSATTHIAWPLLSWRQNFKTGVLALLPLFLQRRPMLKLFMDDYPSSLSVKLKSSLGEGKELRQKRKVDELAKYVNSRVIAFQRIESRILVSEPSKQEAEENVRSRIQYLSKRKDLLEISKRRLDAKKAKHHARPVNINSQCRHDDHISTVPTIIIFCVALNIAICVIHFCLRMDIKAQRTEVSYGICKYWLAGRCNRKHCRYLHKLTPGSPTAYQYRRQSHWFAEKKPKNDVKDLLVKKSGGDGTSSSKASEKSSQSICKYWMNGNCVHGDQCWNLHAWFQGDGFSTLAKLCEHKKIITGIALPVGSDKLFSGSTDGTVRLWDCHTGQCSNVINLGSEVRSLISEGPWVFAGVLNAVKVFNTQTAAEFSLDGPKGQVFSMVVGNDTLFAGAKDGAIYAWRGSSEKNSPFAPVASLSGHTRAVVCLTVGRKKLYSGSMDHTIKVWDLDTLQCTMTLKEHTSVVTSLICWDQYLLSSSLDGTVKIWAATDRGTLEVIYTHHEENGVVALGGMTDPEGKRILFCSCNDHSVRLYELPSFALRGQLFSKQEVRTIEVAPGGLFFTGDGTGLLTVWKWLAEPKMATS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0963 584 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 334 IPR001680 GO:0005515
Glsi06g0963 584 PANTHER - 134 581 IPR044715 -
Glsi06g0963 584 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 486 IPR001680 GO:0005515
Glsi06g0963 584 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Glsi06g0963 584 PRINTS G protein beta WD-40 repeat signature 474 488 IPR020472 -
Glsi06g0963 584 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Glsi06g0963 584 SUPERFAMILY WD40 repeat-like 288 575 IPR036322 GO:0005515
Glsi06g0963 584 ProSiteProfiles Zinc finger C3H1-type profile. 255 282 IPR000571 GO:0046872
Glsi06g0963 584 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 417 450 - -
Glsi06g0963 584 Gene3D - 432 582 IPR015943 GO:0005515
Glsi06g0963 584 Gene3D - 279 431 IPR015943 GO:0005515
Glsi06g0963 584 Gene3D - 187 278 - -
Glsi06g0963 584 ProSiteProfiles Trp-Asp (WD) repeats profile. 417 456 IPR001680 GO:0005515
Glsi06g0963 584 ProSitePatterns Trp-Asp (WD) repeats signature. 434 448 IPR019775 -
Glsi06g0963 584 ProSiteProfiles Zinc finger C3H1-type profile. 188 209 IPR000571 GO:0046872
Glsi06g0963 584 SMART c3hfinal6 185 208 IPR000571 GO:0046872
Glsi06g0963 584 SMART c3hfinal6 255 281 IPR000571 GO:0046872
Glsi06g0963 584 Pfam WD domain, G-beta repeat 413 447 IPR001680 GO:0005515
Glsi06g0963 584 Pfam WD domain, G-beta repeat 452 486 IPR001680 GO:0005515
Glsi06g0963 584 Pfam WD domain, G-beta repeat 290 325 IPR001680 GO:0005515
Glsi06g0963 584 SUPERFAMILY CCCH zinc finger 256 280 IPR036855 GO:0046872
Glsi06g0963 584 SMART WD40_4 410 447 IPR001680 GO:0005515
Glsi06g0963 584 SMART WD40_4 491 534 IPR001680 GO:0005515
Glsi06g0963 584 SMART WD40_4 537 574 IPR001680 GO:0005515
Glsi06g0963 584 SMART WD40_4 450 487 IPR001680 GO:0005515
Glsi06g0963 584 SMART WD40_4 365 402 IPR001680 GO:0005515
Glsi06g0963 584 SMART WD40_4 286 325 IPR001680 GO:0005515
Glsi06g0963 584 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 293 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0963 Glsi-ChrGlsi06 11259370 11268288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0963 259 464 Eukaryotic Initiation Factors Gene Family AT2G46290 26.087 3.31e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi06g0963 WD40 0.0016 CL0186