Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0947 ATGGCGAGCACACAAGAAACTGAGCTCCAACAGTTCCTCCAGTGGTCACAGGCAAATGGAGTTGAACTACAAGGTTGCAAGATCAGGTACTGTGATTCCAGAAAAGGGTTTGGCATCTTTTCAGCCAAAGATGTTTCCGACGGGGTTCTGTTGGTTGTTCCACTGGATTTAGCAATAACTCCAATGAGGGTATTGCAAGATCCTCTTCTAGGACCAGACTGTAGGGCAATGTTCGAAGAAGGAGAAGTAGATGACAGGTTTTTAATGATTTTGTTCTTGACTGTGGAGCGTTTGCGTAAGAATTCTTCATGGAAGCCGTACCTTGATATGCTTCCAACCACTTTTGGAAATCCACTTTGGTTTAGTGATGATGAACTACAAGAACTGAGGGGGACAACATTGTACCGTGCAACTGAATTGCAGAAGAAAAGCCTGCTGTCTTTGTATGATACTAAAGCAAGGGCTTTGGTGAACAAACTCTTGACTCTTGCTGGGGATTCAGAAATTGAGGTGAGCTTTGAAGATTTCCTTTGGGCAAATTCAGTATTCTGGAGCCGTGCTTTGAACATCCCTTTTCCTCGTTCTTATGTATTTCCAAAAATGCAAGAAGCACATGACTGTTGCATTTCAGTCAATGGAAGTGTCAAGACTTCCACTACTGAAAGCCAGGTTTCAAAGTCTGATGATCAAGTCAATGAAATGACATGTAACACCCAAGGAGACACTGTTTGGGTGGAGGGTCTTGTGCCAGGCATTGACTTTTGCAACCATGATCTGGAGCCAATAGCAACATGGGAAGTTGATGGAACTGGATCAATAACTGGAGTTCCTTCTTCCATGTACCTTCTTTCTGCTGCACAAAAACCCTTGGAGATTGGTCAAGAAATTTCCATTAGTTATGGCAACAAAGGAAATGAGGAACTTCTATATCTGTATGGTTTTGTGATTGATGATAACCCAGATGACTATCTCATGGTCCACTATCCAGCAGAAGCAATTGATACTATATCTTGTTCAGAATCCAAAAGCCAGCTTCTTGAAGCCCAGAAGGCTGAAATGAGATGTCTTTTACCCAAGACTTTTCTGGATCATGGATTTTTTCCAGTAGGCACCCAAAAAGGTGGAGTAAATAACAAGTGCACAGTCGACCAAGTTTGCAACTATAGTTGGAGTGGTCAGCGCAAGATGCCATCTTATGCAAATAAGCTGGTTTTCCCTGAGAAATTCATGACTGCCTTAAGAACCATAGCCATGCAAGAGAATGAGATCTTTCAGGTTTCCTCACTGCTGGAAGAGCTTCTGGGATCTGGAGGGGAGAGACAACTATCAGATACAGATGTCCAATCGGCAGTATGGGAGGTTTGCGGTGATTCTGGAGCTTTGCAATTGCTTGTTGATCTTCTTCATGTAAGGTTGGTGGATCTTGAAGAGGGTTCCGGAATGGAGGAAAGCGACACTGATTTACTCAACAAGGCCCTTATTGTTGTTGATAGCCAGGAAGATGACAAACAGTTCAAGAATAATTTGAGCACGAATGAGTCTGTGGAGCACATGTTGATGAGTAGAAACAAATGGTCTGCTATAGTATATCGGCAAGGGCAGAAGCAACTCACTCGATTATTCTTGAAAGAAGCAGAACATGCTCTGCAATTATCATTGAACGAAGAAGAGAATTAG 1677 0.427 MASTQETELQQFLQWSQANGVELQGCKIRYCDSRKGFGIFSAKDVSDGVLLVVPLDLAITPMRVLQDPLLGPDCRAMFEEGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPLWFSDDELQELRGTTLYRATELQKKSLLSLYDTKARALVNKLLTLAGDSEIEVSFEDFLWANSVFWSRALNIPFPRSYVFPKMQEAHDCCISVNGSVKTSTTESQVSKSDDQVNEMTCNTQGDTVWVEGLVPGIDFCNHDLEPIATWEVDGTGSITGVPSSMYLLSAAQKPLEIGQEISISYGNKGNEELLYLYGFVIDDNPDDYLMVHYPAEAIDTISCSESKSQLLEAQKAEMRCLLPKTFLDHGFFPVGTQKGGVNNKCTVDQVCNYSWSGQRKMPSYANKLVFPEKFMTALRTIAMQENEIFQVSSLLEELLGSGGERQLSDTDVQSAVWEVCGDSGALQLLVDLLHVRLVDLEEGSGMEESDTDLLNKALIVVDSQEDDKQFKNNLSTNESVEHMLMSRNKWSAIVYRQGQKQLTRLFLKEAEHALQLSLNEEEN 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0947 558 CDD SET_LSMT 32 315 - -
Glsi06g0947 558 Gene3D set domain protein methyltransferase, domain 1 5 315 - -
Glsi06g0947 558 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 477 - -
Glsi06g0947 558 ProSiteProfiles SET domain profile. 24 301 IPR001214 GO:0005515
Glsi06g0947 558 SUPERFAMILY SET domain 9 319 IPR046341 -
Glsi06g0947 558 Pfam SET domain 36 301 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0947 Glsi-ChrGlsi06 10679964 10690455 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi06g0947 SET 2.5e-11 No_clan