Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0943 ATGGGGGTGGGAGGAAATTTCTGGGATTTGCTAAAGCCATATGCCAGAGCGGAAGGTTTCGATTTCTTGAGGAACAAGCGAGTTGCTGTGGATCTTTCCTTTTGGATTGTCCAGCATGAGAATGCCATCAAGGCGCATGCCCGGAAACCCCACCTACGTCTTACCTTCTTTCGGACCATCACTCTCTTCTCCAAGTTTGGAGCGTTTCCAGTTTTCGTCGTGGATGGAACTCCATCGCCCTTGAAATCACAGGCCAGGATTACAAGATTTTTCCGTTCTTCTGGCATCCAATTAACTAGCTTGCCGGTGGCTGAAGAAGGTGCTTCAGTTGAGAGGAATCCTGCATTTTCAAGATGCATTCAAGAATGTGTGGAACTTGTTGAGTTACTTGGAATGCCTGTAATAAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCTGATAGTGATGCATTCCTCTATGGAGCCAAATGCATTATAAAAAGCTTCTGCCCCAATTCCAAAGAACCATTTGAATGCTACAATATGTCAGATATTGAAGCTGGTCTTGGGTTGAAGACGAAACACTTTATAGCTATCTCTCTTCTGGTTGGAAATGATCATGATTTAAAGGGTGTTCAAGGGATTGGGCTTGATACAGCTCTTCGTTTTGTTCGAGCTTTTAGTGAAGAAGAAGTGTTGGATAAATTACATGAGATAGGCAATGGGAAAGTTTCAGTAGTTCCCACCAGCATTATATCTGCAGACAACTGTGCTGACATGGATGGGAACTCTCCAAGAAAAAAACAACTTCACTGTTCCTTCTGTGGGCATCCAGGCAGCAAAAGAGATCATATGAAGTTTTCCTGTGAATATTGCAATACAAATGATGAAGGTTGCTTGAGAAAACCAGAGGGTTTTAATTGTGGTTGTTTCTCCTGTGATATGATTAGGAAACAAAAGGGGCAGAAAAGGCTGGAAAATTGGTACACAAAAATTTGTAACAAGATTGCAGAGGAGCCAAAATTTCCCAGGGATGAAATCATTGAAATGTATTTATGCAATGACAATGGTTATTTTTCTGCAAGTGATGGCCCTTGCATCTCATGGGGAAGACCCAAGATTGAGATGCTGATAGATTTTATAAACTTTCATCAGCACTGGGATCCGTCTTACATTCGACAGCAGATTTTTCCTATGATGTCCACCATCTTTTTGAGAGATATGGCTAGTACTCCTGTAGAAAGTTTGTTGTTTGGGAAATATGAGTTTGATTCATTAAAACGTGTGAAGATAAGATATGGATATCAATTTTATGTGGTCAAGTGGAGATGTGCAGTAGGCAACATTACCTGTACAATTCCGTCACATGAATCTGGCATGCAACAAGAAGATGATAGGGAGCTTGATGAATTGGTGGATCTATTGGATGACTCTGATGTTCCTGAGATTCATATGGGTGATGGATGTAGCTTTCTGTTGACAGATGAAAATATGGAGCTTGTGAAGGCTGCTTTTCCTGCAGAAGTTGAAAGGTTTTGGCAGGAACAGGAACTGAAGGAATTGAAAAGAAGAAAGACTTCAACCTCAAGATCTCAAGACAATGAAAATTCATCATCGTTAAACTCAAGAAGTAGTCAGCGAAACATTACAGAGTTCTACCGTTCAACCAAAACGCTAAATCAGTCAAAACAGGAAGAGCCATCTAAGAACTTTGATATCCTAGAGGGTGGGACCTCAGAAGGGAAAAGAAAATTGTCAAGCCCAAATCTGTCAAAATCTGTGAGGCGTCGCCTTTTATTTAACTAG 1827 0.4116 MGVGGNFWDLLKPYARAEGFDFLRNKRVAVDLSFWIVQHENAIKAHARKPHLRLTFFRTITLFSKFGAFPVFVVDGTPSPLKSQARITRFFRSSGIQLTSLPVAEEGASVERNPAFSRCIQECVELVELLGMPVIKAKGEAEALCAQLNSEGHVDACITADSDAFLYGAKCIIKSFCPNSKEPFECYNMSDIEAGLGLKTKHFIAISLLVGNDHDLKGVQGIGLDTALRFVRAFSEEEVLDKLHEIGNGKVSVVPTSIISADNCADMDGNSPRKKQLHCSFCGHPGSKRDHMKFSCEYCNTNDEGCLRKPEGFNCGCFSCDMIRKQKGQKRLENWYTKICNKIAEEPKFPRDEIIEMYLCNDNGYFSASDGPCISWGRPKIEMLIDFINFHQHWDPSYIRQQIFPMMSTIFLRDMASTPVESLLFGKYEFDSLKRVKIRYGYQFYVVKWRCAVGNITCTIPSHESGMQQEDDRELDELVDLLDDSDVPEIHMGDGCSFLLTDENMELVKAAFPAEVERFWQEQELKELKRRKTSTSRSQDNENSSSLNSRSSQRNITEFYRSTKTLNQSKQEEPSKNFDILEGGTSEGKRKLSSPNLSKSVRRRLLFN 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0943 608 MobiDBLite consensus disorder prediction 530 597 - -
Glsi06g0943 608 SMART xpgn3 1 96 IPR006085 GO:0004518
Glsi06g0943 608 SMART xpgineu 128 198 IPR006086 GO:0004518
Glsi06g0943 608 Gene3D - 3 197 - -
Glsi06g0943 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Glsi06g0943 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Glsi06g0943 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Glsi06g0943 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Glsi06g0943 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Glsi06g0943 608 CDD PIN_GEN1 2 202 - -
Glsi06g0943 608 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Glsi06g0943 608 MobiDBLite consensus disorder prediction 538 574 - -
Glsi06g0943 608 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 413 IPR036279 -
Glsi06g0943 608 FunFam Flap endonuclease GEN-like 1 2 197 - -
Glsi06g0943 608 Gene3D - 198 258 - -
Glsi06g0943 608 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Glsi06g0943 608 FunFam Flap endonuclease GEN-like 1 198 255 - -
Glsi06g0943 608 Pfam XPG N-terminal domain 1 90 IPR006085 GO:0004518
Glsi06g0943 608 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 555 IPR006084 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0943 16 245 Core DNA Replication Machinery Family AT5G26680 28.400 3.35e-18 85.5