Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0942 ATGGGGTCTGGTGGTCTCCAGTCAGATGAATTGAGTCAATACATTATTCAAAAACCTAGTCTTAGAGTTTTGGTTGTGGATGGCGATTCGGCGTGTCTAGCAATTGCATCCAAAATTCTTCGTACCCTTGGATATGAAGGTGGGAAATCATCTCTGGCTGTCGAGTCTTGTGGACTTTCCAATAGAATAACAAACTCTGCTCTGAATGGTTTAATGCTTTTTTTTGTTGTAACTGCTAGACTTGCCTCCGATGCGTTATCAATTGTTCAGGAGAAGAAGAACGAGCTTCACCTGGTGCTCATGGAGGTTCATATGCCTGACATGGGAAGATATGAGCTCATTGAGAAAATGAGGGAAAGCTCCAAATTGCCATTATTCATTATGTCTGCTGATAATAAGCAGATTTCGATGGAGGCAGCATTAGCCAAAGGGGCTGAAAAATATTTTATAAAGCCAGTTATGATTGCTGATTTAAGGGGCCTATGGCAGTTTGCAAGAAGACAGAGAAATGATAAAGCAATAGCCAGTGAAAATGTACCTGGCTTTGTGGGGGATGAATCAGAGGGGAATATGGGGAATCAGAGACTCCCAAGTACAAAAAGGAAAGAGCCAGAACTGTTTGTTAAAGATGAAAGGGGAGAAACTGTTGAACCACTACCCCCCCAAAAGAAAAAGTTTATCTGGACTATTGAAATGCGCAAGAGGTTTATGGAATCTTACAAACAATTAGGAACCAATGGAGCTCGTCCAAAGAAAATACTTGAGCATATGAATATGCCAGGGCTTACGAAAGAGATTGTTTCAAGCTATTTACAGAATTTACTATCTCAGAATTATCGCAAGTCCTTGAAACGAGAAGAGAAAGCAACACAGAACGTTGTTGGAGATTCATCTAATTTACATTCGGCATCAGACCATCAGTCTCCAGCGAATAACCTGCCAGAAAGATGCCTTCCATTCTTGGAGCAGCAACGTGTGATCCATCAACCAAACTTAAGCACCAACTGTCAGAAGGATCCCGGTAGTTTTGCATCCAAGCATTTTCTACGTCCTGCACATTTTCCTTCCCTGGAAATTTTGACTGGTCAGGAGTTAAATTGTAGGCAAAATCAATCGATTCTGCTGTGCAACATACAAGGCATTGTACCTGTCCCCCATGAAGTTATGATCAATGGTAATGGGGAGGCATTTGCAAGGCAGTCGGAAATTGCTACTGGGGGAGGAAACTTCAAAAGTGACACATTTCTCTCCTATGTGGGTTATATTAGTGGAGGATATGAAATGGAGCAACTATTTCCCCAGCACCTACTGCTTCCTGTTCCTCTACTACCATCAGAGGGAGAACAACATAACATTTCAGAGGCTGAGACTGATGAGGTTTTTGATTTTCCAAAAGGAGCTCAACAGTTTAATGATGAGGATTTGAACCACTGGTTATCAAGTCTTTAA 1449 0.4161 MGSGGLQSDELSQYIIQKPSLRVLVVDGDSACLAIASKILRTLGYEGGKSSLAVESCGLSNRITNSALNGLMLFFVVTARLASDALSIVQEKKNELHLVLMEVHMPDMGRYELIEKMRESSKLPLFIMSADNKQISMEAALAKGAEKYFIKPVMIADLRGLWQFARRQRNDKAIASENVPGFVGDESEGNMGNQRLPSTKRKEPELFVKDERGETVEPLPPQKKKFIWTIEMRKRFMESYKQLGTNGARPKKILEHMNMPGLTKEIVSSYLQNLLSQNYRKSLKREEKATQNVVGDSSNLHSASDHQSPANNLPERCLPFLEQQRVIHQPNLSTNCQKDPGSFASKHFLRPAHFPSLEILTGQELNCRQNQSILLCNIQGIVPVPHEVMINGNGEAFARQSEIATGGGNFKSDTFLSYVGYISGGYEMEQLFPQHLLLPVPLLPSEGEQHNISEAETDEVFDFPKGAQQFNDEDLNHWLSSL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0942 482 Gene3D - 20 178 - -
Glsi06g0942 482 ProSiteProfiles Response regulatory domain profile. 22 166 IPR001789 GO:0000160
Glsi06g0942 482 CDD REC_typeB_ARR-like 23 165 - -
Glsi06g0942 482 Gene3D - 221 286 - -
Glsi06g0942 482 SMART REC_2 49 162 IPR001789 GO:0000160
Glsi06g0942 482 NCBIfam myb-like DNA-binding domain, SHAQKYF class 223 274 IPR006447 GO:0003677
Glsi06g0942 482 MobiDBLite consensus disorder prediction 282 312 - -
Glsi06g0942 482 MobiDBLite consensus disorder prediction 292 311 - -
Glsi06g0942 482 Pfam Response regulator receiver domain 75 159 IPR001789 GO:0000160
Glsi06g0942 482 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 307 IPR045279 GO:0009736
Glsi06g0942 482 SUPERFAMILY Homeodomain-like 221 274 IPR009057 -
Glsi06g0942 482 SUPERFAMILY CheY-like 74 168 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0942 Glsi-ChrGlsi06 10622931 10627587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0942 2 261 Response Regulator Gene Family AT4G16110 32.975 6.85e-32 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi06g0942 Response_reg 3.6e-10 CL0304