Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0941 ATGCTTGCCAGGGCTTTAGCACATTACGGCAAATACAGATGTGCAAGAAAGGAATCAGTCTTTATCCAAGGTGACTTCGGAGCAAAAATGTCCCGTTTGTTTGGTTCCTTTTCAAACCTCCCTTCAAATGGCAAAACTAGAGCATCTTGTGATGATGTAGTTTTGAATGTTAATATCACTTTCAGTGATCATAGTCATGATATTGCAAAAGGCACTTTTTATAGAAAAGGTAGTAGTACTGGAATTTCCAATAATCCTTCAAAGCTTCATAGGAATGCCTCTGCTGCATCTGATATGAGTAGCGCTTCTTCCCATTTTGGTCCAACAAATTCAGCTTACTTTTATAGTCCCTGTAATACTAACCTGCAGTTGAATCTCAATTTCCTCTTGATCAAGGATCTTAGTACTTGGAATCTAATTCTACTAGCCTGGTTGTTTCTTGGTTATAGGAATTATGTGGAGGTTCTCTCTAATTCTGAAGCTCATTCTCCTACTAGCTCTGGAAGTATAAAATCAAATCTTCCTCAAAAGGTGTTAGAATCACTATTTAACATTCCCAGAACCTCTGAACATGACAAAGATACCATGAGTTGGAGGAATTTTTTGAAGAAAATGCTGTCATTGGGACCCGAGTTTGATATTTGTCCACATGTTGCAGAGAACCTCAGCAATATACTTTCGGTATTTAATGTCATATTTGCAACACTTGACTCTTTGCTTGTACTGGCTCCTTTTAAGCCATATTCTTTGGTTTGTGTTTCCATTTTATCATTCAACAATACTTGTCTGATCTTCAGGAGTTATGAAGTTCTGAACATTACATCCGATTTTCATGAATCTGTTGCATGGTCATTTTTCTCATTGATTTTTAATTTTGTCATGAAATGGAGCCTTAAAGCAGTGAAAATGTTAGATTCAGCGGCTGCGAGAGCCACAAGATTTCTCTGGTTGCATCTTCTCTCATTGGGAATGGTCTTTGGTTTCCGCGGCATTTCCTCTGAGCGTAATCGGTTTCCCTGTGAACGGTTTTCGGTTTCTTTACCATTTATTGGGTTTCCTCAGCATTTCCTCTTTGAATGGTATTCGGTTTCTTCTGCATATCAACATTACTCTGTGGACAGTATTGGGTTCCCTGAGCATTTCTTCGCGAGTGGTATTCGGTTTCCTCAGCATTTCCTTTGTGAATATGAGTGGTATTTTAGTCAACATGGTTTCTTTTTATCTTCGTCCATACTTATGGCTGGTCTTCCTCCTTCGTTTGCCTCAGCATATCCTGACTCCTGTGTGGAAAGGAAAACTGATCACTTGGCATTGCTAAAGTTCCAAGAATCCATATCTATTGACCCTTTTGAAATCTTGGCATCTTGGAATCGTTCTAAGCACTTATGCTATTGGCCTGGAGTCACATGCAGCCATAGGCATCAAAGAGTTACAAGTTTGATCTCACAAGGATATGAATTGTGTGGTTTCATATCACCCCCTCTTAGGAACCTCTCCTTTGTGAGAAACCTCAACCTCGTAAACAACAGCTTCTATGGAGAAATCCAACAAGAATTGGGTCGTTTATTTTGCCTGCAGTATCTCTTTCTAGGCTATAACAGATTGGCAGGAGAAATTCCTACCAACTTGACAAGCTGCTCTGTACTCAGAAGGTTTTGGTTACAAGAAAATAACCTTGTTGGCAAAATACCTATGGGCATTGGCTCTCTTAGGAAGCTTGAGAGTTTTGTTGGACCAGTTCCTAGTCTAGGTAATCTGCAATATCCATGGTGGTTGGGTTTAAGTACTAATAGTCTAAGTATTAGTTCAGATAATGACTTGGATTTTGTCACATTATTGACAAATTGTAGCAAATTGGAACGTTTGGATTTGTCTTCTAATGGTTTTAAAGGGGAACTATACCTTACTGATTCTTGGTCTTTCCTCTTTATCAATTCTACTGAACTTAACTCATTAAGTGGAAGTCTAACTGCTCAAGTGGGTATGCTAAACAATATTGGTCTTCAACATCTTGACCTATCAAGAAACAACTTGTCAAGATCAATTCCAGATGATCTAGAATATATTTCTACCTTAGAATACCTGAATGTTTCTTTTAACTGGCTAGATGGCAAGGTGCTGATAGAAGGGATAATTTGTGTGGTTGCTTTTATTCTACTATTGTCATCCATTCTTGCTATGTACTGGAAGAGGAAAAGAAAGGAGTCATTCTCCAGTTCACTGAGAACTGACCTGTTTCCTAGGGTGTCATACCAGAGCCTACACCAAGCAACTGATGGATTTTCAGATAAAATTTTTATAGGATCTGAAACTTTTGGCTCTGTTTATAAAGCAATGCTTGACTCTGAAGAAGGACTAGTTGCTATAAAGGAACTCAACCGTCAAAAGAGGGGAGCTCACAAGAGTTTCACAGCTGAAACTAATGCACTTAGAAATATCCCGCATCCAAATCTGGTTAAGATTTTAACGTGCTGCTCTAGTATGGATTACAATGGCAATGAATTTAAAGCTCTAAATTTTGAGTACATGGCAAATGGAAGCTTAGAGAAATGGCTGCATGTAGAGTCAAAAAGCGGAGATGAGTCAAGAAGTTTGGACCTTCTTCTAAGACTTATTGTGGACCCATCACTTCTTCCAAGAGAATTAAAACAATTGGCAGCAATAACAAAAGAAGAAAATTGCCCTTTGGAGATTGTGGCCAATTTGCTTCCTAATAAAGGGAGCTGCTTATCTTCACTATTTAACGTTGGTCTGTTTGCTCAGTAA 2766 0.3861 MLARALAHYGKYRCARKESVFIQGDFGAKMSRLFGSFSNLPSNGKTRASCDDVVLNVNITFSDHSHDIAKGTFYRKGSSTGISNNPSKLHRNASAASDMSSASSHFGPTNSAYFYSPCNTNLQLNLNFLLIKDLSTWNLILLAWLFLGYRNYVEVLSNSEAHSPTSSGSIKSNLPQKVLESLFNIPRTSEHDKDTMSWRNFLKKMLSLGPEFDICPHVAENLSNILSVFNVIFATLDSLLVLAPFKPYSLVCVSILSFNNTCLIFRSYEVLNITSDFHESVAWSFFSLIFNFVMKWSLKAVKMLDSAAARATRFLWLHLLSLGMVFGFRGISSERNRFPCERFSVSLPFIGFPQHFLFEWYSVSSAYQHYSVDSIGFPEHFFASGIRFPQHFLCEYEWYFSQHGFFLSSSILMAGLPPSFASAYPDSCVERKTDHLALLKFQESISIDPFEILASWNRSKHLCYWPGVTCSHRHQRVTSLISQGYELCGFISPPLRNLSFVRNLNLVNNSFYGEIQQELGRLFCLQYLFLGYNRLAGEIPTNLTSCSVLRRFWLQENNLVGKIPMGIGSLRKLESFVGPVPSLGNLQYPWWLGLSTNSLSISSDNDLDFVTLLTNCSKLERLDLSSNGFKGELYLTDSWSFLFINSTELNSLSGSLTAQVGMLNNIGLQHLDLSRNNLSRSIPDDLEYISTLEYLNVSFNWLDGKVLIEGIICVVAFILLLSSILAMYWKRKRKESFSSSLRTDLFPRVSYQSLHQATDGFSDKIFIGSETFGSVYKAMLDSEEGLVAIKELNRQKRGAHKSFTAETNALRNIPHPNLVKILTCCSSMDYNGNEFKALNFEYMANGSLEKWLHVESKSGDESRSLDLLLRLIVDPSLLPRELKQLAAITKEENCPLEIVANLLPNKGSCLSSLFNVGLFAQ 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0941 921 FunFam Nuclear pore complex protein NUP107 431 578 - -
Glsi06g0941 921 SUPERFAMILY L domain-like 430 707 - -
Glsi06g0941 921 Gene3D Ribonuclease Inhibitor 576 719 IPR032675 -
Glsi06g0941 921 Gene3D Phosphorylase Kinase; domain 1 723 842 - -
Glsi06g0941 921 Pfam Leucine rich repeat N-terminal domain 432 471 IPR013210 -
Glsi06g0941 921 ProSiteProfiles Leucine-rich repeat profile. 667 689 IPR001611 GO:0005515
Glsi06g0941 921 SMART tyrkin_6 761 913 IPR020635 GO:0004713|GO:0006468
Glsi06g0941 921 Gene3D Ribonuclease Inhibitor 431 575 IPR032675 -
Glsi06g0941 921 Pfam Protein tyrosine and serine/threonine kinase 767 858 IPR001245 GO:0004672|GO:0006468
Glsi06g0941 921 SUPERFAMILY Protein kinase-like (PK-like) 734 857 IPR011009 -
Glsi06g0941 921 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 430 633 - -
Glsi06g0941 921 ProSiteProfiles Protein kinase domain profile. 761 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0941 Glsi-ChrGlsi06 10607660 10617499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0941 487 871 Receptor kinase-like Gene Family AT3G47570 34.222 2.77e-55 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi06g0941 PK_Tyr_Ser-Thr 2.1e-11 CL0016