Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0933 ATGTTGGGTTCAAATACCAATTTGGTGACCACGGTCATTGGATTTGGTATGAGTGCAACTTTTATTGTGTTTGTTTGCACAAGAATAATCTGTGGAAGAATAAGAGGACGGAGCTTTGAATCTCAGAATATGTTTGAGATTGAATCAAGAACAGATATAGAACAGCCAGAACATCATGCTAACCGCCCTGAACCTGTTCTTGTTACTGCAATCCCCACTATGAAGTTCAACCAAGAGGCTTTCAGTTCTATTGAAGATACACAGTGTGTGATATGTTTGGCAGAGTACAAGGAAAGAGACCTACTGCGCATCATGCCGAAATGTGGCCACAGTTTTCATCTTTCTTGCATTGATATGTGGCTGAGAAAACAATCCACTTGCCCAGTATGCCGAGTGCCGTTGCAAAGTTCTTCTGAAACAAAGCATGTGAGACCAGTAACATTCAGCATGGGGTATAATGAGTCACAGACTTCTGAAAGGAGAGGTGGTGATCAGAGGCATTTTGAATCAGTTCCTGGCAGTCCCTTGCAGCCAGCTTATGCAGAACCAGTAACATTCAGCATGGGGAATGACGACGAGTTTCAGACTTCTGAAAGGGGAGGCAGTGATCCTAGGCCTTTTGAATCAGTTCCTGGCAGTCCCGTACAACCGACTTCTGCAGAACCAGTAACATTCAGCATGGGGCATGGTGATGAGTCTCAGACTTCTGAAAGGAGAAGCAGTGATCAGAATCATTTTGAATCAGCTGCTGGCAGTCCCTTACAACCTGCTTCTGCAGAACCAGAAACAAGGCAATGA 798 0.4449 MLGSNTNLVTTVIGFGMSATFIVFVCTRIICGRIRGRSFESQNMFEIESRTDIEQPEHHANRPEPVLVTAIPTMKFNQEAFSSIEDTQCVICLAEYKERDLLRIMPKCGHSFHLSCIDMWLRKQSTCPVCRVPLQSSSETKHVRPVTFSMGYNESQTSERRGGDQRHFESVPGSPLQPAYAEPVTFSMGNDDEFQTSERGGSDPRPFESVPGSPVQPTSAEPVTFSMGHGDESQTSERRSSDQNHFESAAGSPLQPASAEPETRQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0933 265 PANTHER OS11G0150450 PROTEIN 1 165 - -
Glsi06g0933 265 CDD RING-H2_EL5-like 88 131 - -
Glsi06g0933 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 141 IPR013083 -
Glsi06g0933 265 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Glsi06g0933 265 SMART FANCL_C_2 85 139 - -
Glsi06g0933 265 MobiDBLite consensus disorder prediction 212 231 - -
Glsi06g0933 265 MobiDBLite consensus disorder prediction 145 265 - -
Glsi06g0933 265 FunFam Putative RING zinc finger domain superfamily protein 65 137 - -
Glsi06g0933 265 SMART ring_2 89 130 IPR001841 -
Glsi06g0933 265 SUPERFAMILY RING/U-box 79 137 - -
Glsi06g0933 265 Pfam Ring finger domain 88 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0933 Glsi-ChrGlsi06 10487871 10489489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0933 6 134 C3H Transcription Factor Family AT2G34990 34.307 4.58e-18 80.5