Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0932 ATGGCAGGAGGAGCTGAAGCTGCTAAGAAATATGCTTCTGCTACGGCAGCATCTAAGACTAACAATTTGGGACAACCAAAGAAGCCGGCCACCACCATGATGAAAAGGTTCATTGGGGTTAGGCAAAGGCCATCTGGAAGATGGGTGGCTGAGATCAAGGATTCATCCCAGCACGTGAGGCTATGGCTTGGCACCTATGACACACCAGAAGAAGCAGCTAGGGCTTATGACGAAGCAGCCAGGGCTCTGCGTGGAGAAAATGCCCGAACCAACTTTACAAACCACCCAATAGGCCAGAACCAACCGGCAGGCTCAAGTGTCCCTTCAAATGAAGGGCCATCTGATGGGAAACATGGGCTGAGCTTTGCTTCATTGAAAGCCAAGCTGAGCAAGAATCTTCAGAGTATCATGGCTAGGGCAAGTGACCATAATAATAAGCCGTCATCGAAGAGTAGGGTCAGTGACCATTTCACCTTTGCTAGCATATTTCACAGGAGGAGCTACCAATACCAGACTCCTGCTGATTCAGATTATATGGAGAAAGTGGTGAAGCCTAGTATAATTGTGCCTTCTACGGAAGCTTCTTCTGCTTGGGAAACCTCCAGTGTGTCTGATTGTAACAGCAGCTGCTCGGAGTGGGTCGGGTTCAGGCAACCTGGGTTGGACTCAGATGGGTCGGATGTGGGTGAAGTTGGGGTTGGTGAACAGGGGTTTAATCTGGAGCAATTGATGGCGTGGGTGGATAGCCCAGAATATTCTCATGATCATGTTTATGCAAGTACTAGTATTGATGGAGGAAGTGATGAGGGATCAAGGAGTAAAAGGTTTAAGGTTTCTTCTTCTGTGCTTGTGCCTCCAACTTTCAGTGGGTCTTCTCCATATGGTTATGATTGTGGGTCTCCTTATAGTAATGGTTGCGGCTCCCCATATAGTGCTTATTGCTCTCCATATAATGGTGGGAAGTGA 966 0.4803 MAGGAEAAKKYASATAASKTNNLGQPKKPATTMMKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFTNHPIGQNQPAGSSVPSNEGPSDGKHGLSFASLKAKLSKNLQSIMARASDHNNKPSSKSRVSDHFTFASIFHRRSYQYQTPADSDYMEKVVKPSIIVPSTEASSAWETSSVSDCNSSCSEWVGFRQPGLDSDGSDVGEVGVGEQGFNLEQLMAWVDSPEYSHDHVYASTSIDGGSDEGSRSKRFKVSSSVLVPPTFSGSSPYGYDCGSPYSNGCGSPYSAYCSPYNGGK 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0932 321 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Glsi06g0932 321 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Glsi06g0932 321 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Glsi06g0932 321 MobiDBLite consensus disorder prediction 90 112 - -
Glsi06g0932 321 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Glsi06g0932 321 MobiDBLite consensus disorder prediction 14 28 - -
Glsi06g0932 321 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Glsi06g0932 321 CDD AP2 35 95 IPR001471 GO:0003700|GO:0006355
Glsi06g0932 321 MobiDBLite consensus disorder prediction 1 31 - -
Glsi06g0932 321 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Glsi06g0932 321 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Glsi06g0932 321 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Glsi06g0932 321 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 190 - -
Glsi06g0932 321 MobiDBLite consensus disorder prediction 90 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0932 Glsi-ChrGlsi06 10477018 10477983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0932 36 95 AP2-EREBP Transcription Factor Family AT5G19790 73.333 4.48e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi06g0932 AP2 9.8e-16 CL0081