Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0931 ATGAAGCCCATCTTTTGTGGAAACCTGGATTTTGATGCGCGCCAGTCCGATGTTGAAAGACTCTTCAGAAGATATGGGAAGGTTGATAGAGTGGACTTGAAGTCCGGGTTTGCTTTTGTATACATGGAAGATGAACGTGACGCTGAGTATGCAATTAGAAGACTTGATAGAACAGAATTTGGTAGAAAGGGGCGCCGAATACGTGTGGAGTGGACTAAGCAAGAACGTGATAGCAGAAGGCCAGGTGATTCAAGAAGGTCTTCTACTAATACGAGACCATCAAAGACATTGTTTGTCATAAATTTTGATCCAGTTCATACCAGGACAAGGGATATAGAGAGACACTTTGATCCCTATGGGAAAATATTGAATATAAGGATCAGAAGGAACTTTGCTTTTGTTCAGTATGAATCCCTTGAGGATGCTACTAGAGCATTGGAGGCGACTAACATGAGCAAGTTATTGGATCGGGCTATCACAGTGGAGTATGCAATAAGAGATGATGATGATAGAAGAAATGGATACAGTCCTGATAGAAGAGGTCGTGACATCTCCCCTGATGGGAGATATGGTCGCGGTAGATCTCTTAGTCCCTACCATAGAGGTAGGGGTAGCCCAGACTATGGCCATGGATCAAATCCAACTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGAGATGAAAGCCCAATGAATGGGAGATATGACAGCCGATCGCCTCCACCTCGAGACAGGTCTCGTTCCCGAGGAGAAGTTGAATAG 768 0.4479 MKPIFCGNLDFDARQSDVERLFRRYGKVDRVDLKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRPGDSRRSSTNTRPSKTLFVINFDPVHTRTRDIERHFDPYGKILNIRIRRNFAFVQYESLEDATRALEATNMSKLLDRAITVEYAIRDDDDRRNGYSPDRRGRDISPDGRYGRGRSLSPYHRGRGSPDYGHGSNPTSRPEPRGSPKYERDESPMNGRYDSRSPPPRDRSRSRGEVE 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0931 255 SMART rrm1_1 3 70 IPR000504 GO:0003723
Glsi06g0931 255 SMART rrm1_1 96 162 IPR000504 GO:0003723
Glsi06g0931 255 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 106 247 - -
Glsi06g0931 255 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Glsi06g0931 255 Gene3D - 87 254 IPR012677 -
Glsi06g0931 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Glsi06g0931 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Glsi06g0931 255 MobiDBLite consensus disorder prediction 221 255 - -
Glsi06g0931 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Glsi06g0931 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Glsi06g0931 255 MobiDBLite consensus disorder prediction 169 255 - -
Glsi06g0931 255 MobiDBLite consensus disorder prediction 169 189 - -
Glsi06g0931 255 Gene3D - 1 86 IPR012677 -
Glsi06g0931 255 FunFam Serine/arginine-rich splicing factor RS31 87 177 - -
Glsi06g0931 255 SUPERFAMILY RNA-binding domain, RBD 4 167 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0931 Glsi-ChrGlsi06 10460562 10463509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0931 94 174 Eukaryotic Initiation Factors Gene Family AT1G49760 30.337 3.44e-06 45.8