Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0916 ATGCTCAATTCAAGCTCATTACCTTCTTCTCCACCCGATGCTGCCGTCGATACCTCGCCGCTCCTCAGCACCTCCTTATCCGACCACCTCCCTCGGAGCCGTCGCATCCTCCGTCGAACGCCGCCTTTACGGAGCGCTGCACGGTTCTTCCGCCGTGCTAGCGAACGGCGTATGATGCTGCGGGAGCCCTCGGTGCTGGTTCGTGAAAATGCGGCGGAGGAGCTGGAGGAGCGCCAGATTGATTGGGCGTTCTCCAAGCCGGTGGTATTATTGGATATCTTGTGGAATTTGGCGTTTATTGCAATTGGGGTTATCGTGTTGGGATTGAGCACGAAGGAAAAGCCACCTGTGCCTTTGAGGCTGTGGATTTCGGGGTACTTGTTGCAGGGTGTACTTCACTGTGTGTGTGTGATTGTTGCATACCGACGGCGCAGCGAAGCAGGTTCTGCGATGTTGGAACAGAATGGGGTTTGGGAAGGTGGTGAAGATTCGAATTCTAGCCTTGTGAGGGATGGAGAGGATTCTGCTTCAAGTCAGCTTCAGGAAGATGACAGAGTCAGCATCACAAAGAACGTAGAGTCTGCAAACACCAAACTTTCATTCATGTGGTGGGCTATTGGATTCTACTGGGTAACTTCTGGGGACCAGAGCTTGACACAGGATTCACCTCAGCTTTACTGGCTTTGTATCACCTTTCTTGCTTTTGAAGTTGTAATTGTTCTGATCTGTGGGGTTGTCGCATGCCTTGTTGGTATTGCTGTTTGCTGCTTTCTTCCATGCATACTTGCTCTACTGTCTGTGGTTGCAGATCAGGAAGGGGCAACAAAGGAAGAAATTGATCAGTTGCCAAAATACAAGTTCTGTAGGGTAGAGGAATCTAAGAATGCTGATGGTGATGGCATCCGGGATTCTTTCAAAGGAATAATGACGGAATGTGACAGTGATACACCCACAGAGCATGTTCTTTCTTTGGAAGATGCAGAATGCTGTATTTGCCTTCTGGCTTACGAAGATGGTGCCGAACTTAGAGAACTTCCTTGTAACCACCATTTCCACTGCGACTGCATCGACAAGTGGTTGCACATCAACGCTACCTGCCCTCTCTGCAAATTGAACGTTTTAAGGACTGAAAATGACCATCAAGAAGTTTGA 1152 0.4922 MLNSSSLPSSPPDAAVDTSPLLSTSLSDHLPRSRRILRRTPPLRSAARFFRRASERRMMLREPSVLVRENAAEELEERQIDWAFSKPVVLLDILWNLAFIAIGVIVLGLSTKEKPPVPLRLWISGYLLQGVLHCVCVIVAYRRRSEAGSAMLEQNGVWEGGEDSNSSLVRDGEDSASSQLQEDDRVSITKNVESANTKLSFMWWAIGFYWVTSGDQSLTQDSPQLYWLCITFLAFEVVIVLICGVVACLVGIAVCCFLPCILALLSVVADQEGATKEEIDQLPKYKFCRVEESKNADGDGIRDSFKGIMTECDSDTPTEHVLSLEDAECCICLLAYEDGAELRELPCNHHFHCDCIDKWLHINATCPLCKLNVLRTENDHQEV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0916 383 MobiDBLite consensus disorder prediction 162 182 - -
Glsi06g0916 383 SUPERFAMILY RING/U-box 319 375 - -
Glsi06g0916 383 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Glsi06g0916 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 383 IPR013083 -
Glsi06g0916 383 PANTHER TARGET OF ERK KINASE MPK-1 50 377 - -
Glsi06g0916 383 SMART ring_2 329 369 IPR001841 -
Glsi06g0916 383 Pfam Ring finger domain 328 370 IPR001841 -
Glsi06g0916 383 CDD RING-H2_PA-TM-RING 328 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0916 Glsi-ChrGlsi06 10245636 10250059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0916 9 375 C3H Transcription Factor Family AT1G68070 46.092 5.02e-104 309