Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0886 ATGGTAGATTCCACAGAAAGGTATGCTGTAGTTACAGGGGCAAACAAAGGGATAGGGTTAGAGACCGTGAAGATGTTGGCCTCAAATGGAGTCAAGGTGGTGCTCACAGCCAGAGATGAGAAAAGGGGCCTTGAAGCCCTTGAGAAATTGAGAGACTCTGGTCTTTCTCACCTTGTAATTTTTCACCAGCTTGATGTGATGGATCCTGCCAGTATTGCATCTCTTGTAGATTTTGTTAAAACCCAGTTTGGGAAACTTGATATTTTGGTAAACAATGCAGGAATCAATGGTGTTAATATGGAGGAGTTGGTGGGGCCTACTATCAATTGGTATGATTTGACTCAAACTTACGAGTTGGCTGAAAAATGCCTAAAAACAAACTACTATGGTGCTAAGGAAACAGCTGAGGCATTTCTTCCCCTTCTCCAGTTGTCCAATTCACCAAGGATTGTTAATGTTTCCTCCCAAGCAGGGTTGTTAAAGAACATATCAAACGAATGGGCAAAGGGAGTGTTTGATGATGCTGAAAATCTCACAGAAGAGAGAATAGATGAGGTACTGAAGGAGTTTATAAAAGACTTCAAAGAAGGTTCAATAGAAGCCAAAGGGTGGCGGACCTTTCTGTCTGCCTATATGGTTTCAAAAGCAGCCATGAATTCTTACACAAGGATGATGGCCAAAAGGTACCCAAATTTTTGCATTAACTGTGTCTGCCCTGGCTTTGTCAAAACTGACATAAACGGAAACACTGGCATTTTATCTGTAGAAGAAGGTGCTGCTAGTGTTGTGAGATTAGCCCTTCTGCCTTGTGGTTCCCCTACTGGTCTCTTCTTTGTTAGACAAGAAGTTAATGTTAACATGGATGAGTCGATGAAGATCAAAGTGTTGGAAGCTGAAAAGGGTATGATAAACAAGAAGGACAAGCAGTTGCCATTGTCAGACATTGATTTTCAGTCTAGACAGGATGACGCGGTTGTAAGGGTGAGCTGCCCATTGGATATCCATCCTGTTTCTGGAGTTGTTAAAACGTCGAGGGAACGTCAAATTGTAGCACAAGAGTCAAGTGTTTCAACTGCAGATGATAAGGTCATTCATACATTCTCCATAAAAACTCAAGGTGGTCAGGGTGCTGCTATACAGTTGAAGGAGTTGTTATGTTCTCATGTTTATTCATCTGTCAATCTGAAGTTAAAGAAGTGTGAAGATAATCTAGAATGA 1218 0.4146 MVDSTERYAVVTGANKGIGLETVKMLASNGVKVVLTARDEKRGLEALEKLRDSGLSHLVIFHQLDVMDPASIASLVDFVKTQFGKLDILVNNAGINGVNMEELVGPTINWYDLTQTYELAEKCLKTNYYGAKETAEAFLPLLQLSNSPRIVNVSSQAGLLKNISNEWAKGVFDDAENLTEERIDEVLKEFIKDFKEGSIEAKGWRTFLSAYMVSKAAMNSYTRMMAKRYPNFCINCVCPGFVKTDINGNTGILSVEEGAASVVRLALLPCGSPTGLFFVRQEVNVNMDESMKIKVLEAEKGMINKKDKQLPLSDIDFQSRQDDAVVRVSCPLDIHPVSGVVKTSRERQIVAQESSVSTADDKVIHTFSIKTQGGQGAAIQLKELLCSHVYSSVNLKLKKCEDNLE 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0886 405 Gene3D - 2 286 - -
Glsi06g0886 405 CDD carb_red_PTCR-like_SDR_c 7 283 IPR045313 GO:0016616
Glsi06g0886 405 Coils Coil 390 405 - -
Glsi06g0886 405 FunFam (+)-neomenthol dehydrogenase 2 286 - -
Glsi06g0886 405 Pfam short chain dehydrogenase 8 162 IPR002347 -
Glsi06g0886 405 Pfam short chain dehydrogenase 204 249 IPR002347 -
Glsi06g0886 405 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 283 - -
Glsi06g0886 405 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Glsi06g0886 405 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Glsi06g0886 405 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 211 230 IPR002347 -
Glsi06g0886 405 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 270 IPR036291 -
Glsi06g0886 405 PRINTS Glucose/ribitol dehydrogenase family signature 211 230 IPR002347 -
Glsi06g0886 405 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Glsi06g0886 405 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Glsi06g0886 405 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Glsi06g0886 405 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0886 Glsi-ChrGlsi06 9783911 9790758 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0886 288 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 43.434 1.40e-20 91.7