Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0872 ATGCTATTTGGTCTGCCATTGTGGGTTCTCCTAGATTGTAGTTTCTTAGTCCTCAGATTAGTCTTGATATATGGCGTGGTTGACCAACACAGTGAATCCTTGTTCATTCAAAAGATTGCTTTTGGGAATGGACTTGCAAACTTAGTTGCATGGTCTCTTTGGATTCTCCAGTCTTCTCCAAATGACGATTGCAGAAGGGGTTTTGTTAATGTTTTGTTGTGGAAAACAGAAGGGAGAATGGGACGTGTACCCTGTTGCGACAAAAGGGGTTTGAAGAAAGGACCATGGACAGCTGAAGAGGATGAGATTCTTGTTAATTATATCAAGAACAATGGTGGCCATGGAAGCTGGCGTTCTCTCCCCAAGTTGGCAGGGCTTCTCCGATGTGGGAAGAGTTGCCGGCTCAGGTGGACCAACTATCTCAAACCTGATATCAAACGTGGCCCCTTCACTCTTGAGGAAGAGAAGCTAGTCATACAACTTCATGGCATCCTTGGAAATAGGTGGGCTGCCATTGCCTCTCAGCTACCAGGAAGAACAGACAATGAGATAAAAAATCTATGGAATACCCACTTGAAGAAGCGCCTTGTATCCATGGGACTTGACCCACAAACCCACGAGCCAGTGGCCTCTGGTTGCCTAAAGGACAAGGCCCAGGCATCTGTCTCCACCCGTCACCTGGCTCAGTGGGAGAGTGCTAGGCTCGAAGCAGAGGCTAGGCTCTCAAGGGACTCATCTCTCTTCAACCCCTCCTCCTCTGCAGCAAATGGCCCCACCAAAACTCATGACTATGACTATTTCCTTCGCATTTGGAACTCTGAAGTTGGCGCAACATTTCGTAACATTCATAAAAATCTCACCGGCCTCATCCCCATTTCTTCAAACAGATGGGGGTCATTGTCTGGCGTTACAGTAGAAGTGGGCCAAAACCCAGAAGGATCCTCAACCTCAGCAACCAATTTGAAGGACAGTGCAAATGCAATGGCTGGGTTTGATTCATCAAGCTTTGATGAGTTAGAAGATTCATTAGATTCTGCATTGCAACTGTTGTTAGATTTCCGCATAAACAATGACATAAGCTTCTTAAAAGGGAACTCCTTTATTTGCCCTCTTTAG 1116 0.4615 MLFGLPLWVLLDCSFLVLRLVLIYGVVDQHSESLFIQKIAFGNGLANLVAWSLWILQSSPNDDCRRGFVNVLLWKTEGRMGRVPCCDKRGLKKGPWTAEEDEILVNYIKNNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLKPDIKRGPFTLEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLVSMGLDPQTHEPVASGCLKDKAQASVSTRHLAQWESARLEAEARLSRDSSLFNPSSSAANGPTKTHDYDYFLRIWNSEVGATFRNIHKNLTGLIPISSNRWGSLSGVTVEVGQNPEGSSTSATNLKDSANAMAGFDSSSFDELEDSLDSALQLLLDFRINNDISFLKGNSFICPL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0872 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 142 196 IPR017930 -
Glsi06g0872 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 80 287 - -
Glsi06g0872 371 ProSiteProfiles Myb-like domain profile. 142 192 IPR001005 -
Glsi06g0872 371 CDD SANT 95 141 IPR001005 -
Glsi06g0872 371 Pfam Myb-like DNA-binding domain 147 192 IPR001005 -
Glsi06g0872 371 Pfam Myb-like DNA-binding domain 93 141 IPR001005 -
Glsi06g0872 371 ProSiteProfiles Myb-like domain profile. 88 141 IPR001005 -
Glsi06g0872 371 FunFam Myb transcription factor 90 147 - -
Glsi06g0872 371 SUPERFAMILY Homeodomain-like 90 188 IPR009057 -
Glsi06g0872 371 Gene3D - 149 196 - -
Glsi06g0872 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 141 IPR017930 -
Glsi06g0872 371 Gene3D - 90 147 - -
Glsi06g0872 371 FunFam MYB transcription factor 149 196 - -
Glsi06g0872 371 CDD SANT 149 192 IPR001005 -
Glsi06g0872 371 SMART sant 146 194 IPR001005 -
Glsi06g0872 371 SMART sant 92 143 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0872 Glsi-ChrGlsi06 9552128 9569698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0872 80 365 MYB Transcription Factor Family AT3G61250 63.758 9.72e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi06g0872 Myb_DNA-binding 6.8e-13 CL0123