Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0871 ATGAACAATAGAAGATACCCACCTGGGATCGGAGTAGGCCGTGGGGGAGGTGTGAACTCGAACCCTGCGTTTCAGCCACGACCCCCTCAGCAACAGTATGTGCAGAGGCAAATGGTGCAGCATCAACAGCAGTACCAGCAGCAGCTACAACAACAACAGTGGCTGAGAAGAACGCAGTTGGGCGGTACTGATTCCAACGTGATTGACGAGGTGGAGAAGACTGTACAGTCTGAAGCCGTTGATCCAAGTTCACAAGATTGGAAGGCACGATTAAAGATACCAGCACCTGATACACGCTATAGGACAGAGGATGTGACCGCAACGAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAGGAAGAAAGTATTCCGATTGCCCTTACTGGCAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCTTTTTGTATTCCTGCGCTGGAAAAAATTGATCAGGATCACAATGCTATTCAAGTTGTTATACTGGTCCCAACACGTGAGTTGGCTTTGCAGACTTCTCAAGTGTGTAAAGAGCTGGGAAAGCATTTGAACATCCAAGTAATGGTTACAACAGGTGGTACCAGCCTGAAAGACGATATTATGCGTTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGTGTTCTGAAAGACTGCAGTATGCTTGTTATGGACGAGGCAGATAAGCTTCTATCCCCTGAGTTCCAACCTTCAATAGAGCAACTGATTCATTTCCTGCCTCCAAACCGTCAAATCCTGATGTTTTCAGCTACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCATAAACCATATATCATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAATTTTATGCGTTTGTGGAAGAGAGACAGAAAGTCCACTGCCTGAATACTCTTTTCTCTAAGCTGCAAATAAATCAGTCAATTATCTTCTGCAATTCGGTCAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTACATTCATGCAAAGATGTTGCAAGATCATCGTAACAGAGTATTTCATGACTTCCGCAATGGTGCATGTAGGAATCTTGTTTGTACTGATCTTTTCACAAGGGGAATAGACATTCAAGCAGTCAATGTGGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGATTTGGGCACCTTGGTTTAGCAGTTAACCTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAGCAAATACCACCACACATTGATCAGGCAATTTATTGCCGGTGA 1458 0.4225 MNNRRYPPGIGVGRGGGVNSNPAFQPRPPQQQYVQRQMVQHQQQYQQQLQQQQWLRRTQLGGTDSNVIDEVEKTVQSEAVDPSSQDWKARLKIPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDHNAIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIHFLPPNRQILMFSATFPVTVKDFKDRYLHKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0871 485 Gene3D - 316 485 IPR027417 -
Glsi06g0871 485 CDD SF2_C_DEAD 323 452 - -
Glsi06g0871 485 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Glsi06g0871 485 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 312 IPR014001 -
Glsi06g0871 485 FunFam ATP-dependent RNA helicase DDX6 316 485 - -
Glsi06g0871 485 MobiDBLite consensus disorder prediction 1 29 - -
Glsi06g0871 485 Gene3D - 63 315 IPR027417 -
Glsi06g0871 485 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 258 266 IPR000629 -
Glsi06g0871 485 Pfam DEAD/DEAH box helicase 136 300 IPR011545 GO:0003676|GO:0005524
Glsi06g0871 485 CDD DEADc_DDX6 113 313 - -
Glsi06g0871 485 SMART helicmild6 362 443 IPR001650 -
Glsi06g0871 485 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 482 IPR001650 -
Glsi06g0871 485 Pfam Helicase conserved C-terminal domain 337 443 IPR001650 -
Glsi06g0871 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 465 IPR027417 -
Glsi06g0871 485 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 46 484 - -
Glsi06g0871 485 FunFam ATP-dependent RNA helicase DDX6 92 315 - -
Glsi06g0871 485 SMART ultradead3 130 326 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0871 Glsi-ChrGlsi06 9546366 9551189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0871 113 482 Eukaryotic Initiation Factors Gene Family AT3G19760 38.978 3.02e-97 297