Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0841 ATGGATCGGGGGGACCAAATGGCGTTATCTGGGTCTGCATCTTACTATATGCAGAGGGGAATAGCTGGTTCTGCAGCACAGCCTGAGCTACATGGTTCGACAACTATTCGCCCATTGTCTAATTCCAATCTACCATTTCAACCCAACATTGGAGGTGGTTCCATTGGATCCACTTTACCATTAGAATCTTCGGCAATTTCACCTCATGGTGTCAATGTGGGTGCTCCTTCTGGGGTGCCATCTGTGGAATCTGTCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGGCCAGAAGGAACTGTGTCACTGGGATTGACTCCACCATCGTCTAGTCATCCTGGAAGTGGAACTGGAAGTGTGACACAAAGCCATAAGCGGGGTAGAGGGCGTCCGCCCGGGACTGGCAAGAAACAGCAGTTAGCTTCTCTTGGTGAATTGATGTCTGGTTCGGCTGGGATGGGTTTCACTCCTCATATCATCACCATTGCAATTGGAGAAGATATTGCAACAAAAATAATGGCATTTGCTCAGCAGGGGCCTAGAGCTGTATGTGTTTTGTCAGCCAATGGTGCTGTCTCTACTGTGACACTCCGTCAGACTTCAACTTTGGGTGGAACTCTCACATATGAGGGGCGTTATGAGATATTGTGCCTGTCAGGCTCTTATTTGCTTAATGATAGTAGTGGCTCATGCAATCGAACCGGCGGACTAAGTGTCTCCCTTGCTAGTCCTGATGGCAAAGTCATAGGTGGAGGAATCTGTGGATCGCTCATTGCAGCATGTCCTGTTCAGGTGGTAGTTGGTAGCTTTCTATGGGGTGGATCAAAGACAAAGAACAAGAAGAAGGAAGTTGCAGAAGTTGCTGTGGAGTCAGATCAACAGGCAGTTCATAATCCAATGTCATCGAATAACATTATGGGGAATCAAAATCTTACCCAAGCCTCTTCTATGGGTTCTTGGCCTGCATCTCGTCCAATAGATATGCGTAATTCCCATGTTGACATTGATTTGATGCGTGGTTGA 1023 0.4721 MDRGDQMALSGSASYYMQRGIAGSAAQPELHGSTTIRPLSNSNLPFQPNIGGGSIGSTLPLESSAISPHGVNVGAPSGVPSVESVKRKRGRPRKYGPEGTVSLGLTPPSSSHPGSGTGSVTQSHKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIITIAIGEDIATKIMAFAQQGPRAVCVLSANGAVSTVTLRQTSTLGGTLTYEGRYEILCLSGSYLLNDSSGSCNRTGGLSVSLASPDGKVIGGGICGSLIAACPVQVVVGSFLWGGSKTKNKKKEVAEVAVESDQQAVHNPMSSNNIMGNQNLTQASSMGSWPASRPIDMRNSHVDIDLMRG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0841 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 63 310 IPR039605 GO:0003680
Glsi06g0841 340 MobiDBLite consensus disorder prediction 103 124 - -
Glsi06g0841 340 SMART AT_hook_2 125 137 IPR017956 GO:0003677
Glsi06g0841 340 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Glsi06g0841 340 MobiDBLite consensus disorder prediction 25 48 - -
Glsi06g0841 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 155 272 - -
Glsi06g0841 340 MobiDBLite consensus disorder prediction 69 140 - -
Glsi06g0841 340 CDD DUF296 156 270 IPR005175 -
Glsi06g0841 340 Gene3D - 157 297 - -
Glsi06g0841 340 FunFam AT-hook motif nuclear-localized protein 1-like 157 288 - -
Glsi06g0841 340 ProSiteProfiles PPC domain profile profile. 151 292 IPR005175 -
Glsi06g0841 340 MobiDBLite consensus disorder prediction 28 48 - -
Glsi06g0841 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 157 270 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0841 Glsi-ChrGlsi06 8659085 8663124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0841 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.315 4.43e-86 261