Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0839 ATGGGGATTCAATGCTCCAGATTCATGCCATGTTGCGTGAATTCACAAGTGAAGGCTTCTGTTCTTGAAGCTCCAGATACAGAAAATGAGGATAAAAGTGAGGCCAATAACTGGCCTGCATTCCGTGAATTTTCATTGGAGCAACTTAACAATGCAACGTCTGGTTTTGCTCTTGAGAATATTGTATCTGAACATGGAGAGAAGGCTCCGAATGTCGTTTATAAAGGGAAGCTAGAAAATCAAATGAGGATTGCTGTTAAGCGCTTTAATAGAAATGCTTGGCCTGATGGTCGGCAGTTTTTGGAGGAAGCAAGATCAGTTGGTCAGCTTCGCAACCAGCGATTGGCAAATTTGATTGGTTGTTGTTGTGAAGTTGATGAGAGGTTGCTTGTGGCAGAATATATGCCGAATGAAACACTAGCAAAACACCTTTTTCATTGGGAAACACAACCCATGAAATGGGCAATGCGACTAAGAGTTGTTTTACATCTTGCACAAGCTCTAGAATACTGCACAAGCAAAGGGCGAGCCCTCTATCATGACCTTAATGCATATAGAATTTTGTTTGATGAGGATGGTAATCCTAGGCTTTCAAGTTTTGGCCTAATGAAGAATAGTAGGGACGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCGGAGTATCTGAGAACTGGGAGAGTAACACCAGAAAGTGTGATATATAGCTTTGGCACTCTTTTGCTGGATCTTCTCAGTGGGAAGCATATCCCCCCAAGCCATGCCCTTGATTTGATTCGGGACAGAAATCTTCAAATGCTGACAGATTCTTGTTTGGAAGGAGAATTTTCTGATGATGATGGAACTGAGTTGGTGCGCTTGGCATCTCGATGTTTACAATATGAACCTCGAGAACGGCCAAATTCAAAGACATTGGTGGCTGCTTTGTCTCCTCTTCAGAAAGAAACAGAGGTTCCTTCACACATTTTGATGGGTATCCTACACGGTGCTATTTTTGCTTCGTTGTCCCCACTTGGTGAAGCATGCTCAAGAAAGGACTTGACTGCCATACATGAAGTTCTCGAAAATATTGGTTATAAAGATGATGAAGGAGTGACAAATGAGTTATCATTCCAGATGTGGACAGATCAAATACAGGAGATGCTTAATTGTAAGAAAAAGGGGGATGTTGCTTTCAGGCAGAAGGATTTTAGACTGGCAATTGAGTGCTTCACGCAGTTCATTGATGGTGGAATCTTGGTTTCTCCAACAGTCTATGCAAGGCGCAGTTTGTGTTATCTCATTAGTGACATGCCTCAGGAAGCCCTGAACGATGCAATGCAAGCACAAGTCATATCCCCTGTATGGCATATTGCATCTTATCTTCAATTTGTTGCCCTCTCTGGACTTGGAATGGAGAATGAAGCTCAAATAACACTTAAAGAGGGTGCAAATTTGGAAGCCAAGAGGAATGGAACTGCTGGACAAAAGTGA 1476 0.4234 MGIQCSRFMPCCVNSQVKASVLEAPDTENEDKSEANNWPAFREFSLEQLNNATSGFALENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNRNAWPDGRQFLEEARSVGQLRNQRLANLIGCCCEVDERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVVLHLAQALEYCTSKGRALYHDLNAYRILFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGEFSDDDGTELVRLASRCLQYEPRERPNSKTLVAALSPLQKETEVPSHILMGILHGAIFASLSPLGEACSRKDLTAIHEVLENIGYKDDEGVTNELSFQMWTDQIQEMLNCKKKGDVAFRQKDFRLAIECFTQFIDGGILVSPTVYARRSLCYLISDMPQEALNDAMQAQVISPVWHIASYLQFVALSGLGMENEAQITLKEGANLEAKRNGTAGQK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0839 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Glsi06g0839 491 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0839 491 SUPERFAMILY Protein kinase-like (PK-like) 33 318 IPR011009 -
Glsi06g0839 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Glsi06g0839 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 17 485 IPR045845 GO:0004672|GO:0009742
Glsi06g0839 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Glsi06g0839 491 Gene3D Tetratricopeptide repeat domain 380 490 IPR011990 GO:0005515
Glsi06g0839 491 SUPERFAMILY TPR-like 383 480 IPR011990 GO:0005515
Glsi06g0839 491 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Glsi06g0839 491 Gene3D Phosphorylase Kinase; domain 1 29 134 - -
Glsi06g0839 491 FunFam probable serine/threonine-protein kinase At4g35230 380 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0839 Glsi-ChrGlsi06 8629585 8634620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0839 10 310 Glycoside Hydrolase AT3G07070 34.650 4.09e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Glsi06g0839 PK_Tyr_Ser-Thr 1.3e-27 CL0016