Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0813 ATGGCTGTGGGGAGTCCACTGCCCACAACTGTACAAGGGGTCAGTTCTGTGAGGTCACTTAATCACATTGGGGTCACCGGATTCATGGCTGGTAGGGGAGAAATTGCAGGGGAGCATAACCCAGGAGCGGTTACTGACACAATCTATGTTGCTGTGGCAAAAGATGTGAAAGATAGCAAGTTAAATCTGAAGTGGGCAATACGGAACTCTGGAGGAAAGAAGATTTGCATCCTCCATGTTCACGTGCCTGCAACAAGGATCCCCTTGTTAGGTACTAAATTTCCAGCTAGTGCACTGAAAGAACAGGAAGTTGAAGCATACAGGGAAATTGAAAGGCAAAATATGCATAAGGATCTGGATGCGTATATTCTCGTCTGTCAACAAATAGGGGTGCGGGCAGAGAAACTGCATATTGAAATGGAATGCATTGAGAAAGGAATTGTAGAACTCATCTCCCAGTATAGTATCCGTAAGCTTGTAATGGGAGCAGCATCAGATAAGTTTCATTCTAGGAGAATGATGGACCTCAGATCTAAGAAAGCCATCTATGTACGTGATCAAGCTCCAGCTTATTGTCAAATACAGTTCATCTGCGGAGGTCGCCTTATACATACCAGGGATCACCGTTTGGATAATGGTAATGTAGAGGTTGCATCTCCTTCGCTGCAGCAAAGGCCAAATACTGAAGCTGTACATTCACATCACTTGAGGTCTCAAACTATTGCACTGGGGCAGAATCATAGGGTAAAATTCATTAATGCAGCTCAAGAGCTACTTCGCAGAGCAAGGTCTGCCAATGATGGGCATGGAGGGAGCACAGTTGCTGTTTCTTCTCCAGATGACATTGAAGGGTTTTCCCCTCCACGTAACAGGTCGGGTACTGAAGTCAGTTCTGTTGAGTCAGATGGGCTGTCAAGAAGTAGTCATTCAGTAATCTCAACATGCTCTGATAGTGGTGCAGTTGAAGCAGCATTATCCCCAAATTTTATTACTGCGGGAAGTGAGACTGTAGAAGACTCAAGCGAGCTTTCTCTGATTATAGCAGATCTCCGTCATTCATCTCCTCCTAGTGTACTGGATGGAGGAATGGACGATATTTTCTATGATCAACTTGAACGGGCCATGGCTGAGGCTGAGACTGCTAGGCGGGATGCATATAAAGAAGTGATTAGGCGTGTGAAAGCTGAAAAAGATGCCATTGATGCTATTCGCAGGGCTAAAGCCTCTCAAAACTTATATACAGAAGAGTTGAAGCTAAGGAAAAAGGCAGAGGAAGCACAGGAAAAAGAACAAGAAGAACTTCAAAGGATGAAGAGTCAGCGAGACAAAGTTAAGGAAGAACTTCGAGTTGCGCTGGATCAAAAGTCATCACTAGAGAGTCAAATTGCATCATCTGTACTCATGGTAAAGGAGTTGGAACAGAAGATTATATCTGCTGTGGATCTGTTAACAACTTACGAAAAAGAAAGAGATGAGCTGCAGAAGCAGCGTGATAATGCATTAAGAGAGGCTGAGGAGTTGAAGAAAAAACAAGGAGAGGCCTCAAGCACACACGTGCCCCAATTATTTTCAGAATTCTCTTTTCAAGAGATTGAACAAGCAACAGGTAGCTTCAATTTATCCCTAAAGATTGGAGAAGGTGGATATGGAAGTATATATAAAGGTATCTTGCGTCACACTGAAGTGGCTATAAAAATTTTGCACTCTGACAACACCTCGCAAGGACCCTCCGAGTTTCTACAGGAGGTTGATGTATTGAGTAAGTTAAGGCATCCCAATCTTATTACACTTATAGGAGCCTGCCCAGAATCCTGGACTCTAGTCTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGGCTCATGCGCAAGGATAACACACCTCCGTTATCATGGCAAACTCGAATCCGCATTGCTGCTGAGCTGTGCTCTGCTCTCCTCTTTCTTCATTCCAGTAAACCTCACACCATAGTGCATGGAGACTTAAAACCCTCCAATGTTCTCCTTGATGCAAACCTTGTTAGCAAGCTTAGCGACTTTGGAATATGTCGAATATTATCTCATCTTGAGAGTTCAAGTGATAATACTACAGAGTTTTGTAGAACTGTCCCAAAGGGAACTTTTGTCTATATGGATCCTGAATTCTTTGCATCTGGGGAACTTTCTCCAAAATCAGATGTTTATTCATTTGGAATCATACTATTAAGATTGCTGACTGGGAGACCTGCCTTGGGAATAACAAAGGAAGTCCAATATGCATTAGATACAGGAAAGTTGAAATCCCTCTTGGACCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTAAACAGTTGGCTCACTTGGCGTTGAGGTGTTGCGAGATTAATAGAAAGAACCGGCCGGATCTTTATTCAGGTGTCTGGAGAATACTGGAACCGATGAGCGCTTTTTCTGGAGTCCCGAACTCCTTTGGACTAGGTTCTGAAGGGCATATTCAACCTCCTCCACATTTTATTTGTCCAATCTTCCAGGAAGTCATGCGAGATCCGCATGTTGCAGCAGATGGTTATACTTACGAAGCTGAGGCTATACAAGGATGGCTTGACAGTGGTAACGACACTTCACCTATGACAAATGCTAAGCTTGCACATGACAATCTTGTCCCCAACCTTGCTCTTCGCTCTGCAATCCATGACTGGCTTCAAAATCACTGA 2694 0.4388 MAVGSPLPTTVQGVSSVRSLNHIGVTGFMAGRGEIAGEHNPGAVTDTIYVAVAKDVKDSKLNLKWAIRNSGGKKICILHVHVPATRIPLLGTKFPASALKEQEVEAYREIERQNMHKDLDAYILVCQQIGVRAEKLHIEMECIEKGIVELISQYSIRKLVMGAASDKFHSRRMMDLRSKKAIYVRDQAPAYCQIQFICGGRLIHTRDHRLDNGNVEVASPSLQQRPNTEAVHSHHLRSQTIALGQNHRVKFINAAQELLRRARSANDGHGGSTVAVSSPDDIEGFSPPRNRSGTEVSSVESDGLSRSSHSVISTCSDSGAVEAALSPNFITAGSETVEDSSELSLIIADLRHSSPPSVLDGGMDDIFYDQLERAMAEAETARRDAYKEVIRRVKAEKDAIDAIRRAKASQNLYTEELKLRKKAEEAQEKEQEELQRMKSQRDKVKEELRVALDQKSSLESQIASSVLMVKELEQKIISAVDLLTTYEKERDELQKQRDNALREAEELKKKQGEASSTHVPQLFSEFSFQEIEQATGSFNLSLKIGEGGYGSIYKGILRHTEVAIKILHSDNTSQGPSEFLQEVDVLSKLRHPNLITLIGACPESWTLVYEYLPNGSLEDRLMRKDNTPPLSWQTRIRIAAELCSALLFLHSSKPHTIVHGDLKPSNVLLDANLVSKLSDFGICRILSHLESSSDNTTEFCRTVPKGTFVYMDPEFFASGELSPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKSLLDPLAGDWPFVQAKQLAHLALRCCEINRKNRPDLYSGVWRILEPMSAFSGVPNSFGLGSEGHIQPPPHFICPIFQEVMRDPHVAADGYTYEAEAIQGWLDSGNDTSPMTNAKLAHDNLVPNLALRSAIHDWLQNH 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0813 897 Coils Coil 368 396 - -
Glsi06g0813 897 SMART serkin_6 538 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0813 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 825 897 IPR013083 -
Glsi06g0813 897 CDD RING-Ubox_WDSUB1-like 828 883 - -
Glsi06g0813 897 PANTHER OS02G0152300 PROTEIN 48 891 - -
Glsi06g0813 897 SUPERFAMILY RING/U-box 822 896 - -
Glsi06g0813 897 ProSitePatterns Protein kinases ATP-binding region signature. 544 565 IPR017441 GO:0005524
Glsi06g0813 897 Coils Coil 409 517 - -
Glsi06g0813 897 ProSiteProfiles U-box domain profile. 826 897 IPR003613 GO:0004842|GO:0016567
Glsi06g0813 897 Gene3D Transferase(Phosphotransferase) domain 1 612 809 - -
Glsi06g0813 897 SUPERFAMILY Protein kinase-like (PK-like) 515 797 IPR011009 -
Glsi06g0813 897 Pfam Protein kinase domain 541 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0813 897 MobiDBLite consensus disorder prediction 290 312 - -
Glsi06g0813 897 CDD STK_N 47 200 - -
Glsi06g0813 897 Gene3D Phosphorylase Kinase; domain 1 516 611 - -
Glsi06g0813 897 Pfam U-box domain 828 897 IPR003613 GO:0004842|GO:0016567
Glsi06g0813 897 MobiDBLite consensus disorder prediction 263 312 - -
Glsi06g0813 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Glsi06g0813 897 ProSiteProfiles Protein kinase domain profile. 538 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0813 897 SMART Ubox_2 830 893 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0813 Glsi-ChrGlsi06 8372935 8379460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0813 1 897 U-box Gene Family AT2G45910 53.393 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Glsi06g0813 Pkinase 1.7e-42 CL0016