Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0810 ATGCTCATCATCACAGCCCTCCATTCATTCCCATTGTGGGACCCCCATCACATGCATCGTCTTCATCTTTTGCCTCCAGCAATGGAATACTTAAGTGCAATAGGTCTCTCTCTTCGCATTTCCACTATAAAGTCACTCACTCACACTCTGTCCTTTCTACAGAGTAAAGAAAGACACAGGCTTTTCCCGTCTTCTTCGCGGATTTACCAGAAATTTCACCCATTCTACGAAGAGAGAGAGAGCAGAAGCAGAAGCATGGAGGGGAAAGACGAGGATGTGAAGGTCGGAGCTAACAAGTTCAATGAGAGGCAACCCATTGGGACCTCAGCTCAGACAAAGGACTACAAGGAGCCACCACCAGCCCCTCTTTTTGAGCCAGAGGAGCTTCATTCCTGGTCCTTCTGGAGGGCTGGAATTGCTGAGTTCACAGCCACCTTCTTGTTCCTCTACATCACCCTTCTCACTGTAATGGGGTATTCAAGGGCACCCAACAAGTGTGCCTCTGTGGGTATTCAGGGCATTGCTTGGGCATTTGGGGGAATGATCTTTGCCCTTGTCTACTGTACCGCTGGTATCTCAGGTGGGCACATCAACCCAGCAGTGACATTTGGGCTTTTCCTCGCAAGGAAGCTCTCACTAACAAGGGCTCTATTCTATATGGTGATGCAATGTCTTGGTGCTATCTGTGGTGCTGGAGTCGTGAAAGGGTTCCAGCCCCACCTGTATGAGAAATTGGGTGGTGGAGCTAACGTGGTTAACCATGGTTACACTAAGGGAGATGGCCTTGGTGCTGAGATTGTTGGTACCTTTGTTCTTGTCTACACTGTCTTTTCTGCAACTGATGCCAAGAGGAGTGCCAGAGACTCTCATGTCCCTCTCTTGGCTCCACTTCCAATTGGGTTTGCTGTGTTTTTGGTGCACTTGGCAACCATCCCCATCACCGGAACTGGTATCAACCCGGCAAGGAGCCTAGGAGCTGCCATCATTTACAACAAGGATCATGCTTGGGATCACCATTGGATCTTCTGGGTGGGACCATTCATTGGAGCTGCCCTTGCTGCCCTCTACCACCAGATAGTTATCAGAGCCATTCCATTCAAGAGCAGAGCTTGA 1113 0.496 MLIITALHSFPLWDPHHMHRLHLLPPAMEYLSAIGLSLRISTIKSLTHTLSFLQSKERHRLFPSSSRIYQKFHPFYEERESRSRSMEGKDEDVKVGANKFNERQPIGTSAQTKDYKEPPPAPLFEPEELHSWSFWRAGIAEFTATFLFLYITLLTVMGYSRAPNKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQPHLYEKLGGGANVVNHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPLLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDHHWIFWVGPFIGAALAALYHQIVIRAIPFKSRA 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0810 370 NCBIfam MIP family channel protein 140 357 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g0810 370 ProSitePatterns MIP family signature. 196 204 IPR022357 -
Glsi06g0810 370 SUPERFAMILY Aquaporin-like 127 362 IPR023271 -
Glsi06g0810 370 Gene3D Glycerol uptake facilitator protein. 121 368 IPR023271 -
Glsi06g0810 370 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 97 365 IPR034294 -
Glsi06g0810 370 FunFam Probable aquaporin PIP1-2 121 370 - -
Glsi06g0810 370 Pfam Major intrinsic protein 128 357 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g0810 370 CDD MIP 136 360 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g0810 370 PRINTS Major intrinsic protein family signature 136 155 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g0810 370 PRINTS Major intrinsic protein family signature 300 322 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g0810 370 PRINTS Major intrinsic protein family signature 340 360 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g0810 370 PRINTS Major intrinsic protein family signature 264 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g0810 370 PRINTS Major intrinsic protein family signature 178 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g0810 370 PRINTS Major intrinsic protein family signature 215 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0810 Glsi-ChrGlsi06 8323713 8329083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0810 86 369 Major Intrinsic Protein MIP AT4G23400 90.909 0.0 505