Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0795 ATGGGAGGTTGCTGCTGTACTGCCAGAAAACCTCATTTGCATGGAACGCCAGTTTATTACTATTGTCCACCAGCTTTGGAGGAGCGAGAGTCTTTAACTTCTAATGATGGTACAGCTGCTTCACTCACTGCTGGGTTTCTGTTAGGTTTGGACCTGGAAGCATCCACACCTGATACTTACCAGCCCCCTCCTGCACCTCTGCCATATGATATGGTCTTGGGATGTCCAGCTTCTACTGATTCCGAGTCTGGTAGAGAAACAGTTAGTGGTAGTAGTTTTGAAACTTTAATTACATGTGAAGATATTGAAGAATCAGACTGCAAAGCTCAAGCTAATTCTGCACCAATATCTCCAAAGAAGCTAGAACTATCAAAATCAAATAAATCCCATGTATTAATGACAGAAGAAGAGGACTGTTGTCCAATTTGTCTTGAAGAATATGATATTGAGAATCCTAAAACTTTGACAAAGTGTGAACACCACTTTCATCTATCTTGCATTCTTGAGTGGATGGAACGAAGTGACTCCTGTCCTATATGTGATCAGGAGGTGATTTTTGACCAGACACTGAATTAG 576 0.4132 MGGCCCTARKPHLHGTPVYYYCPPALEERESLTSNDGTAASLTAGFLLGLDLEASTPDTYQPPPAPLPYDMVLGCPASTDSESGRETVSGSSFETLITCEDIEESDCKAQANSAPISPKKLELSKSNKSHVLMTEEEDCCPICLEEYDIENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEVIFDQTLN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0795 191 SUPERFAMILY RING/U-box 133 187 - -
Glsi06g0795 191 Pfam Ring finger domain 139 180 IPR001841 -
Glsi06g0795 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Glsi06g0795 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 187 IPR013083 -
Glsi06g0795 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 38 187 - -
Glsi06g0795 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Glsi06g0795 191 SMART ring_2 140 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0795 Glsi-ChrGlsi06 8080935 8084277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0795 1 191 C3H Transcription Factor Family AT4G00335 59.162 1.02e-80 236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0795 06 8080935 8084277 Glsi06g0795 06 8080935 8084277 ECH