Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0792 ATGAAAAACCCATCTGCCTATTCCCGTCGCCGGAACCCGAGCTCCAGCAACCACGGCACGCCGGATCGCCTTGGCTTCTCATCCAGCTATGCCCCTTCCGATGTCAGCACCATTGAGAAGTCAAACTCTAGCCGGAGCTCCGTGGTGGCTGCCGCCAGATCAGTGGCTGGGATTTTCGTTGGTTGCTTCACCCCACCGGAGGCCAGTAGCTCGAACAGCTTCGTGGATTCTGAGGAGTTCAAAGCTCACTCTGTTGTATCGGATGCTTCAACAGCTGGTAGTCAGAGAATGCGTGGTTCAAATCGAGGTGTTAGTATCAGTTCATATAGGTCAACTCAGGGAAAAGAGCCTGGTAATTTGAATTTCACCATGGAGGAAATCTTCCAAGCCACAAGAAACTTCTCCCCTGCTTTCAAGGTTGGCCAAGGTGGTTTCGGGACAGTATACAAGGCAAAACTCAAGGATGGAACTGTTGTCGCAATAAAGCGTGCCAAGAAGACTATTTATGAGAAGCATTTGGGGGCCGAGTTCCAAAGTGAGATCCAAACATTATCACGGGTCGAACATTTGAATTTGGTCAAGTTCTATGGATATTTGGAGGAAGGAGATGAAAGAATTATTGTTGTGGAGTATGTTCCGAATGGAACCCTTAGAGAGCATATAGATTGCATTCATGGAAACGTTCTGGACCTTGCTGCTCGGTTAGACATTGCAATTGATGTGGCACATGCTATCACCTATCTTCATATGTATATAGATCATCCTATCATTCATAGAGACATAAAATCTTCCAACATTCTTCTCACTGAAAATTTTCGAGCTAAGGTAGCCGACTTTGGTTTTTCCAGGCAGGCACCTGACACTGATTCTGGAGTGACCCATATATCCACCCAAGTTAAAGGAACAGCTGGCTACTTGGATCCTGAATACCTGAAAACTTATCAACTAACTGAAAAGAGTGACGTTTATTCATTTGGCGTTTTGCTTGTTGAACTTGTCACAGGTAGACGTCCCATTGAACCAAAAAATGAACTCAGGGAGCGAATAACTGCAAAATGGGCCATGAAGAGATTTATTGAGGGAGCTGCTATCTCGGTCTTGGACCCAAGACTAGATCAGAATGCTGCAAATTCTCTGGCCCTAGAAAAGATACTTGAACTAGCTCTTCAGTGTTTGGCTCCTCATAGACAAAGAAGACCTACCATGAAGAGATGTGGTGAGATCCTTTGGACCATCCGCAAGGATTACAGAGAGCTTGCAGCTTCGAACTTCCGTTCATTATCCTCTACATCCCATAGGAGTGCATCAATAAAAGAGTGA 1320 0.4545 MKNPSAYSRRRNPSSSNHGTPDRLGFSSSYAPSDVSTIEKSNSSRSSVVAAARSVAGIFVGCFTPPEASSSNSFVDSEEFKAHSVVSDASTAGSQRMRGSNRGVSISSYRSTQGKEPGNLNFTMEEIFQATRNFSPAFKVGQGGFGTVYKAKLKDGTVVAIKRAKKTIYEKHLGAEFQSEIQTLSRVEHLNLVKFYGYLEEGDERIIVVEYVPNGTLREHIDCIHGNVLDLAARLDIAIDVAHAITYLHMYIDHPIIHRDIKSSNILLTENFRAKVADFGFSRQAPDTDSGVTHISTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKNELRERITAKWAMKRFIEGAAISVLDPRLDQNAANSLALEKILELALQCLAPHRQRRPTMKRCGEILWTIRKDYRELAASNFRSLSSTSHRSASIKE 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0792 439 CDD STKc_IRAK 140 403 - -
Glsi06g0792 439 SMART serkin_6 134 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0792 439 Pfam Protein kinase domain 139 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0792 439 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 94 211 - -
Glsi06g0792 439 Gene3D Phosphorylase Kinase; domain 1 95 211 - -
Glsi06g0792 439 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 212 423 - -
Glsi06g0792 439 MobiDBLite consensus disorder prediction 1 44 - -
Glsi06g0792 439 ProSitePatterns Protein kinases ATP-binding region signature. 140 166 IPR017441 GO:0005524
Glsi06g0792 439 PANTHER OS01G0750732 PROTEIN 34 425 - -
Glsi06g0792 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Glsi06g0792 439 SUPERFAMILY Protein kinase-like (PK-like) 114 412 IPR011009 -
Glsi06g0792 439 Gene3D Transferase(Phosphotransferase) domain 1 212 432 - -
Glsi06g0792 439 ProSiteProfiles Protein kinase domain profile. 134 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0792 439 MobiDBLite consensus disorder prediction 91 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0792 Glsi-ChrGlsi06 8059265 8062690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0792 57 412 Receptor kinase-like Gene Family AT1G30570 41.737 4.61e-73 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Glsi06g0792 Pkinase 3.7e-51 CL0016