Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0768 ATGGTATCTGTGAACCCAAATCCATCTCCAGGTTTTTACTTCTTCGATTCCATGAATACGGGATTGACGCCCCCAAAAGCAGCCACTCCGACCGCCGCCACGGATTCATCGACAACGGCCGCCGCTGCCAGCGTCAACACGGCGTCGTATCCGGATGATCCGAATACGAAGATCCGAAAACCGTACACGATTACCAAGTCTAGGGAGAGCTGGACGGAGCAGGAGCACGACAAGTTTCTCGAAGCTCTCCAATTATTTGATCGTGACTGGAAGAAGATTGAAGCATTTGTTGGGTCAAAATCAGTTATCCAGATAAGAAGTCATGCACAGAAGTATTTTCTAAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCCCCCAGACCAAAGAGAAAAGCTGCTCACCCTTACCCACAAAAAGCTCCTAAAAATGCTCCATCAGTATCCCAAGGGTCATTGCAATCTTCATCTGCTTTCATTGAGCCTGTGTACATTTATAGGCCAGATTCTTCATCTGTGCTCGGAACACCAGTTACAAGTGTGCCTTTGTCATCTTGGAATTATAATGCTATGCCACCCCTCAGTGTCCCACAACTGACTAAAGATGATGAGGGATTGGCTGGACAAGCAGTTCCTCTTAATTGTTGCTATAGCAGTAGTAATGAGAGCACTCCCGGCACTTGTCCAAATAGCAAAGTTTTAGATCAAGTGGACCAAGCCAAGCCAATAAAAGTAATGCCAGATTTTGCTCAAGTCTACAGGTTCATTGGTAGTGTTTTTGATCCAAATGCAACCAGTCACTTACAAACACTAAAACAGATGGACCCAATAAATGTAGAAACAGTATTGTCATTGATGAGAAACCTCTCCATCAATTTAACGAGTCCTAAGTTTAAGGATCATGTAAGTTCTGTTCCCGTTAGATGAGAAGGTTGCTTTCGTCGGATGATGTTCATTCTGAGAAGGCAAAGACTGGTCATGAAGATGGATGTCGTTGGGCTTATTGTTATGGTCACCTCCGGAGGCTATACTGTATATACTGTTGAGGGCTTAGGGAAGGATGGGAGGGGCCGCCACTGCTGTGTGGCAACCCCGAAACTTGCGGTGGAAATACTCCGTGGAGTAGGAATTTTGGAGGCAGAATTTATTTAA 1155 0.4502 MVSVNPNPSPGFYFFDSMNTGLTPPKAATPTAATDSSTTAAAASVNTASYPDDPNTKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKSVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKNAPSVSQGSLQSSSAFIEPVYIYRPDSSSVLGTPVTSVPLSSWNYNAMPPLSVPQLTKDDEGLAGQAVPLNCCYSSSNESTPGTCPNSKVLDQVDQAKPIKVMPDFAQVYRFIGSVFDPNATSHLQTLKQMDPINVETVLSLMRNLSINLTSPKFKDHVSSVPVRXEGCFRRMMFILRRQRLVMKMDVVGLIVMVTSGGYTVYTVEGLGKDGRGRHCCVATPKLAVEILRGVGILEAEFI 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0768 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Glsi06g0768 384 SUPERFAMILY Homeodomain-like 62 118 IPR009057 -
Glsi06g0768 384 FunFam protein REVEILLE 6 isoform X1 70 118 - -
Glsi06g0768 384 MobiDBLite consensus disorder prediction 117 153 - -
Glsi06g0768 384 NCBIfam myb-like DNA-binding domain, SHAQKYF class 66 115 IPR006447 GO:0003677
Glsi06g0768 384 PANTHER SWI/SNF COMPLEX-RELATED 36 295 - -
Glsi06g0768 384 MobiDBLite consensus disorder prediction 24 54 - -
Glsi06g0768 384 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Glsi06g0768 384 MobiDBLite consensus disorder prediction 24 53 - -
Glsi06g0768 384 ProSiteProfiles SANT domain profile. 66 119 IPR017884 -
Glsi06g0768 384 Gene3D - 71 118 - -
Glsi06g0768 384 CDD SANT 70 113 IPR001005 -
Glsi06g0768 384 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Glsi06g0768 384 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0768 Glsi-ChrGlsi06 7769710 7775953 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi06g0768 Myb_DNA-binding 6.4e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0768 06 7769710 7775953 Glsi06g0768 06 7769710 7775953 ECH