Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0754 ATGACATGCACGTGCTATCGGTTTTCTCCTTCCCATTTCACTTCCCGCGTGAAAATTTTCTGTGGAGGTTTCTCCCATTTTCAAAATTTCGCTCAATTTTCCCAGCTTATTTTGCTGGGGAAAGTGTGGAAGAGAGAAGAACAGAGATCGAAGAGAGAATATAGGAATACTCAGCTAGAGATGGGCGATGGTGGTGGGGACTTTGCCGGAACCATTTGCTCAATCTGCTATGAAGATCTCAAGCCCATTGTTGAAGACCTTCAATCCATCCCTATCTGCGGCCATGTCTTCCACGAGCTCTGTTTGCAGCAATGGTTCGAGTACTGTTCAAAAGCAAAAAAGTGCAGTTGTCCTGTGTGCAAGCAGAGTTGTAGAGCGGGCGATGCGGCTCGGCTATATTTCCAGTCCGTGGGAGACGTGAAGGATGCTGTTCTTCCTGAGAAACCTATTGTTTTTGAGGAAGATGCAGGAGTGTTGCGTAGAGAAGTGAAAAGATTGGAGGTGAAAGTTTCAGGGCTCAGTTCAGCACTGGAGCGGCAAGGGAAGGAATTAGAAGAGCTTACTGAGGAGCTTTGTGCTTGCAAGGAGCAGGCAAAATTGGATATAGAATTAAAAAATGAAGCCCTCAAACAAAAAGCATTCATACAACACCAGCTTCATGTGAAATCAGCGGAGCTTGAGAAGTCAACTTTGGAGTGCTTGAGATTACAAGATAGAAATATGGCATTAGCTAAAGAACTTGCAGCATTCAAATTAGTGTCAGATGTGGACCTTAATGAAGATGAGGTTTTGAAGCTTGCCACTTTGGGTAATGAGGCTAACAGTAAAGAAACAATAGACACATTGAGAAGATCTTTGGTCATGCGGAACAGGAGTTACAAAGAATTAATGACTAAGTGCAATATTCTGGGAAGAGGGGAGGCTCGTTATAGTAAAAAGCTTCAGAAGTCTAAAGAGAAAATCAAGAAACTGAAGGGAAGGGTACAAGAACTGGAGACAGCTGCTGAATTAAAAGAGAACGAAATTCTAAGGTCTCTAAAAGCTTCAAAGAAAAGAAGTTGCTCGAAGAATCTTGAAAGCAATATGAATTCTTACTCTGATATGTTGTCAGCTGGTAAATTTTCATCGAAAGAGCATGAGAAACAAATTTTGACACCGACATCTAAAAGGGATCTATCTGAGAACATCACTAATAAATCATCGCAATCTGTGACGATAGAGAACTATAATGGTACTGACAATAAATATGTGAGTTACAGTAAAGAAAGTATAATTAACAAGCCTCTTTGTGGAGAGAAAAATTGCATCCCAATTGATGAAGATGCTTCAGAATTTACTAAAGCTTCGCCTGGCCTTGCAAAATACAACTGTAAAGACCAAGACAGTGATAATGTTGCTCGTAGGAAGACCACTCCAGCAAAGTCGGAGGCAGCTTCTGGTGTAAAGAGAGAAACTGTAATGCAAGGAGAATATAGCTGGGCTGAGCCTGTAAGAATTGATATCAACGATGAATTGGATAACATTGCTGCTGCTGCTACTATGGATGAAGATGTGATAATACTAGATAATGTGAAACAAGTACAACCCGTGATTAACATTAGAAAAGAATCTACATCGTCATTAGCACTTTCAAGTCCAGGTGATAGCTGTTTTTCTGGTGGGTTACTTGGTCCTGATGGAACTCATCGATACTTGGGTAAATGGTGCAAGCGTGGACAGAACAAGGAATCAATCTCCGGAAAAGGTTCAAGTAATGGGGATTTGATAGCAGTTGGGGCTGATGGTAGAGGTGGTAGAATTAAAGTTCTGAGATCTCCAAACCAAACTTTCCCGGATAATAAGGACAACTCTGTTGGATCAAAAAGGTTAAAGTTCGGACCCAAAGCAAATAGTTTGCAGTCACAGGGGTACCTGCAGATAGAACACTTCTTTGGGAGGGTCAGTCACTAA 1950 0.4144 MTCTCYRFSPSHFTSRVKIFCGGFSHFQNFAQFSQLILLGKVWKREEQRSKREYRNTQLEMGDGGGDFAGTICSICYEDLKPIVEDLQSIPICGHVFHELCLQQWFEYCSKAKKCSCPVCKQSCRAGDAARLYFQSVGDVKDAVLPEKPIVFEEDAGVLRREVKRLEVKVSGLSSALERQGKELEELTEELCACKEQAKLDIELKNEALKQKAFIQHQLHVKSAELEKSTLECLRLQDRNMALAKELAAFKLVSDVDLNEDEVLKLATLGNEANSKETIDTLRRSLVMRNRSYKELMTKCNILGRGEARYSKKLQKSKEKIKKLKGRVQELETAAELKENEILRSLKASKKRSCSKNLESNMNSYSDMLSAGKFSSKEHEKQILTPTSKRDLSENITNKSSQSVTIENYNGTDNKYVSYSKESIINKPLCGEKNCIPIDEDASEFTKASPGLAKYNCKDQDSDNVARRKTTPAKSEAASGVKRETVMQGEYSWAEPVRIDINDELDNIAAAATMDEDVIILDNVKQVQPVINIRKESTSSLALSSPGDSCFSGGLLGPDGTHRYLGKWCKRGQNKESISGKGSSNGDLIAVGADGRGGRIKVLRSPNQTFPDNKDNSVGSKRLKFGPKANSLQSQGYLQIEHFFGRVSH 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0754 649 Coils Coil 307 341 - -
Glsi06g0754 649 ProSiteProfiles Zinc finger RING-type profile. 73 121 IPR001841 -
Glsi06g0754 649 SMART ring_2 73 120 IPR001841 -
Glsi06g0754 649 Coils Coil 170 190 - -
Glsi06g0754 649 SUPERFAMILY RING/U-box 72 125 - -
Glsi06g0754 649 PANTHER RING ZINC FINGER PROTEIN-RELATED 65 647 - -
Glsi06g0754 649 Pfam Ring finger domain 72 121 IPR001841 -
Glsi06g0754 649 CDD RING-H2 73 121 - -
Glsi06g0754 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 131 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0754 531 649 C3H Transcription Factor Family AT4G01270 45.082 4.48e-21 95.1