Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0738 ATGTCCTCCCCCTCCCCCTCCATCTCCGGCGCCGCCTATGCCAACTCCATCTCCAGTTCCTCGCCCTCCGCCTTAATCACCAACCTTAACATTATTCAATCCGCAATCATCAAGGCACTCTTCATCATTCTCCTTCTCGTCTTCCTCATCCGCTTCTGTTTCATCTTTTTACGCCACCGCCACTACGACCGCAACTCCATCATAGCTTACCCCACCGTTCAGAACAACGTTGTCGTTGTCTCTCTTGGGCTCGACCACAATATCATTGATTCCTACCCATGTTTCTTGTACAGTAAGGCTCTCGCATCCGGCACCAACAGCGATACCGAATGTCCGATATGTATTTGTGAGTATGAAGAATCGGATATGCTGAGGATGATGCCCCAATGTCGCCACCGCTTTCACCTTGATTGCCTCGATGCATGGTTGAAGATTAATGGGTCGTGCCCTGTGTGTCGAAACTCGCCGTTGCTACAATTGGCGCCACCACTGTCTCATAATAATGCAGCTAATCCAAGCTAA 522 0.5 MSSPSPSISGAAYANSISSSSPSALITNLNIIQSAIIKALFIILLLVFLIRFCFIFLRHRHYDRNSIIAYPTVQNNVVVVSLGLDHNIIDSYPCFLYSKALASGTNSDTECPICICEYEESDMLRMMPQCRHRFHLDCLDAWLKINGSCPVCRNSPLLQLAPPLSHNNAANPS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0738 173 PANTHER RING-H2 FINGER PROTEIN ATL67 77 165 IPR044289 GO:0016567|GO:0016740
Glsi06g0738 173 SUPERFAMILY RING/U-box 89 158 - -
Glsi06g0738 173 SMART ring_2 111 152 IPR001841 -
Glsi06g0738 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 157 IPR013083 -
Glsi06g0738 173 Pfam Ring finger domain 110 153 IPR001841 -
Glsi06g0738 173 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0738 Glsi-ChrGlsi06 7260715 7261236 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0738 35 165 C3H Transcription Factor Family AT5G07040 34.328 1.81e-23 89.0