Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0652 ATGCCCACAAAACTCTTCTCACAACTTCATCTTCTCCAAGTCTCTTCCTTTGCACGTTTTCCTTCCATGAAGATCGGAGCCCAGATTCCATCTTCCCGACCACTTCCCATTTTCTCTCGCGTCTTTCCCTTCAGGCTAAAGTACCTGGGGTTGGAGTCTCGCGCTGTTCGGAATGAACTACTCATTGTACGGCGATTCTCGACTCGCTCGTTTCCAGGGAGGAGTGGGTCGAGGTCCGAGTTCAACCGGGGGAAGCGGGATGGAGAAAAGGTTCGGGCTTCGAAGAGTCTTATTGATGATGAGGCTGAACTCAGTAACTGGGTTGATGAGTTGAGGACCGATTCTTACCGTGGTCGACTCACCAGTGAAGACGATGACTCGGATGGCGATAGGGGTCGTATTCGTAATGGAGGGAGAGATAGAGGTTCTATGCCTATGAAAGGGAGGAGGGAGAGCGGCGCGGACAAATTTGGCGAGTCAACTCGGAGGAAAACTCGGGGCCCAGCTGAGTCATTCTCGAGGAATTCTCGTATGACCCGGAAATTTGACAACGAAGATAATGATGATGGTGAGGAAGATAAATTCCCATTCCGGAGAAGCATTAGGGTGTCCAAAGGTGGGAATGCGAAATCTCTCTTGGGGAAGAGAAGTGGTGAGGACATGAGGAGAGGGAAAGAGGATGTGTGGAGAAAGTCACATTTGATGAGTGAGGATGATTTTGACAAAGATGAACGGGAGCCGAAGAAGTTCGTGGGCGGCATTAGAGATTTTATAAGTGAAGAAGATAGTGACGTTGAAGATACTGAGGATGATGATGGTGACAATATATTAAAGAAGACTAGAAGTTCCTTGTTTGGTCAAGAAAAGGAGTTGAAGCAGAGCAGCGCGCCAAGAGATTCTCCAGGGACATCTGACTCTTATTTAAGTGAGACCAAATTTGATCAATGTTCAGTATCTCCATTATCATTGAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACTGTTGTGCAGGAGGCAACTCTTCCAGTAATTCTGAGAGGTAAGGATGTCCTAGCCAAGGCGAAGACAGGCACTGGAAAAACTGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTTGCAAAGTCACCTCCAATTGATCGTGATCAAAGACGACCTCCAATTCTTGTGCTTGTCATATGCCCAACTCGGGAGCTTGCAAGTCAAGCTGCTGCAGAAGCCACTAAACTGCTGAAGTACCACCCTTCTATTGGTGTTCAAGTTGTGATTGGAGGGACAAGACTTGCTTTAGAACAGAAAAGCATGCAAGCGAACCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGACCATATCGAGAATACAGCTGGTTTTGCAACTAGGCTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCACTTACTAGACATGGGATTTCGCAAAGACATTGAGAGGATAATTGGTGCAGTTCCTAAACAACGACAAACACTTCTGTTTTCTGCCACCGTTCCAGAAGAGGTCCGCCAAATCTGCCATATTGCTTTGAGAAGAGATCATGAATTTATCAATACAGTTCAAGAGGGTAGTGAGGAGACACATTCGCAGGTCCAACAGATGCATTTAGTTGCCCCATTAGACAAGCATTTCTCCCTGCTCTATGTTCTTCTAAAGGAACATATTGCAGATGATGTGGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTGCTGACCTTCTTGGTGAGTTGAAATTGAATGTGAGAGAAATTCATTCAAGAAAGCCACAGAGCTATAGAACCAGGGTCTCTGAGGAATTTCGGAAGTCAAAGGGCATAATCCTTATTACATCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTGTACAGATGGGTTTGCCGGCTGATAGAGAACAGTATATACATCGACTGGGTAGAACAGGGCGAAGAGGTAAAGAAGGGCAAGGCATATTACTACTGGCTCCTTGGGAAGAATTCTTTTTATCTACTATAAAAGATTTGCCAGTCACGAAAGCACCAGTACCTTCAGTTGATCCAGACACAAGGAAAAAGGTGGAAAAGGCTCTATGCCATGTGGAGATGAAGAACAAAGAAGCAGCATATCAGGCCTGGCTTGGTTACTATAATTCCAACAAGAAAGTAGGGCGAGACAAGTATAGGCTAGTGGAGCTTGCAAATGAGTTCAGTCGAAGCATGGGACTTGATAACCCTCCGGCTATTTCTAGGCTAGTCCTTGGCAAGATGGGCCTTAAAAATATCCCTGGTTTGCGTACCAAATAG 2340 0.4551 MPTKLFSQLHLLQVSSFARFPSMKIGAQIPSSRPLPIFSRVFPFRLKYLGLESRAVRNELLIVRRFSTRSFPGRSGSRSEFNRGKRDGEKVRASKSLIDDEAELSNWVDELRTDSYRGRLTSEDDDSDGDRGRIRNGGRDRGSMPMKGRRESGADKFGESTRRKTRGPAESFSRNSRMTRKFDNEDNDDGEEDKFPFRRSIRVSKGGNAKSLLGKRSGEDMRRGKEDVWRKSHLMSEDDFDKDEREPKKFVGGIRDFISEEDSDVEDTEDDDGDNILKKTRSSLFGQEKELKQSSAPRDSPGTSDSYLSETKFDQCSVSPLSLKGVKDAGYEKMTVVQEATLPVILRGKDVLAKAKTGTGKTVAFLLPSIEVVAKSPPIDRDQRRPPILVLVICPTRELASQAAAEATKLLKYHPSIGVQVVIGGTRLALEQKSMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIERIIGAVPKQRQTLLFSATVPEEVRQICHIALRRDHEFINTVQEGSEETHSQVQQMHLVAPLDKHFSLLYVLLKEHIADDVDYKVLVFCTTAMVTRLVADLLGELKLNVREIHSRKPQSYRTRVSEEFRKSKGIILITSDVSARGVDYPDVTLVVQMGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTIKDLPVTKAPVPSVDPDTRKKVEKALCHVEMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRSMGLDNPPAISRLVLGKMGLKNIPGLRTK 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0652 779 MobiDBLite consensus disorder prediction 79 94 - -
Glsi06g0652 779 Pfam DEAD/DEAH box helicase 336 513 IPR011545 GO:0003676|GO:0005524
Glsi06g0652 779 Gene3D - 534 761 IPR027417 -
Glsi06g0652 779 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 342 525 IPR014001 -
Glsi06g0652 779 Gene3D - 266 526 IPR027417 -
Glsi06g0652 779 MobiDBLite consensus disorder prediction 118 226 - -
Glsi06g0652 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 681 IPR027417 -
Glsi06g0652 779 MobiDBLite consensus disorder prediction 251 308 - -
Glsi06g0652 779 Pfam Helicase conserved C-terminal domain 559 664 IPR001650 -
Glsi06g0652 779 CDD SF2_C_DEAD 540 673 - -
Glsi06g0652 779 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 311 339 IPR014014 GO:0003724
Glsi06g0652 779 PANTHER RNA HELICASE 279 707 - -
Glsi06g0652 779 CDD DEADc_MSS116 318 527 - -
Glsi06g0652 779 SMART ultradead3 330 543 IPR014001 -
Glsi06g0652 779 SMART helicmild6 583 664 IPR001650 -
Glsi06g0652 779 MobiDBLite consensus disorder prediction 272 286 - -
Glsi06g0652 779 MobiDBLite consensus disorder prediction 71 94 - -
Glsi06g0652 779 MobiDBLite consensus disorder prediction 118 200 - -
Glsi06g0652 779 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 559 705 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0652 Glsi-ChrGlsi06 6223817 6229182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0652 303 692 Eukaryotic Initiation Factors Gene Family AT3G19760 27.586 1.38e-45 167