Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0649 ATGAATACAAAGGGGCATAAATTTGTGAGGTTTAAGGATTGGAGTCCAGAGTCATCTTTTAGTATCGAGCAGAACAATTCTACTGATAATGGATATCATGAAAGAAAACTTAGACCGAGTGTGAGTACTATTTTAGAGAGTTTTAGAAGAAGACTCGAGAGTGGGTCCAAGAAGATAAAAAAATTGAGAAAATCCTCAACTGTCCATCCTGTCAGTGATGGACCACCCAAAAAATTGGCTCCTAGAAGCAAAATTCTTGATCCGCAGGGGACAGTTCTTCAGAAATGGAACAAAATATTTGTAATCACTTGTGTGATGTCAGTCTCTGTGGACCCGCTGTTCTTTTATATCCCAGTGATTGATGACAATGAAAAATGCCTTGACTTGGATGGAACCTTGCAAATTACTGCTTCTGTTCTTCGTACATTCTTTGATCTTTTCTACATTCTGCGCATAATCTTTCAGTTTCGAACTGGGTTTATTGCTCCTTCTTCTCGAGTATTTGGAAGGGGTGAGCTGATTGATGATCCTTGGGCTATAATGAAAAGATACTTATCTTCGCACTTCATCATTGACATTCTATCAATTCTTCCACTTCCACAGGTGGTTGTTTTATTTATCATTCCCAACCTTAAAAGCTCAATTCCATTTGTGGCAAAGGACTTATTGGAGTATATAATCTTTGTCCAGTATGTGCCACGGCTACTGCGGATTTATCCATTATTCGAAGAAGTAACTACAACTTCTGGCATACTCACAGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTCTCTCTATATGCTAGCAAGTCATATGGTTGGAGCTTTCTGGTACCTGTTTTCTGTAGAATCAGAGCTTCGGTGCTGGCGCCGAGTGTTGAAGAATGCTAAGATCTCTGATAATGCATACATGAGTTGTGAACACCACCACGATCGAACTTTTGTTTCACTTTTCAATAGTTCTTGCACTGCCATTGATCCTGATGACATTAAGAACTCAACAGTCTTCAATTTTGGAATATACGCCGATGCTCTACAATCTGGTGTGGTTGAATCAACAACAGATTTTCCTCAAAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGACAAAACCTCAAGACAAGTACTTATGTTGGGGAGATAGTCTTTGCAATCTTCATTGCGATCTTTGGATTGGTTTTGTTCTCATTACTTATTGGAAACATGCAGAAATATCTGCAATCCACTACTGTTAGAGTTGAAGAGATGAGAGTCAAAAGGAGAGATGTAGAGCAATGGATGTCCCACCGTATGCTACCTGAGAACTTGAGGGAAAGAATTAGACGCTATGAACATTACAAATGGCAAGAAAATCGTGGTGTTGAGGAGGAAACATTAATTCACAACCTTCCTAAAGATCTCCGAAGGGACATAAAGCGTCATCTTTGTTTGGCTTTGCTTAAAAAAGTGCCAATGTTTGAGAAAATGGATGAACAGTTGATGGATGCAATGTGTGACAAACTGAAGCCAGTTCTTTATACAGAGAAGAGCTACATTGCTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATTATGCGCGGAAACCTTGCTACTATGACAACGAACGGAGGAAGAACTGGTTTCTTTAACTCCTCTGTTCTCAAGGCTGGTGACTTTTGTGGAGAAGAGCTTCTAACATGGGCCTTGGACCCAAATTCCTCCTCAAATCTTCCCATTTCAACGAGAACAGTAGAAGCTATATCAGAAGTTGAAGCGTTTGCTCTCATGGCTGATGACTTGAAGTTTGTTGCTTCCCAATATCGACGTCTTCACAGCAAACGGCTCCAGCACGTATTCAGGTTCTATTCCTTGCAATGGAGAACATGGGGTGCCTGTTTCATACAAGCTGCTTGGCGTCGCCACTACAAAAAGAAGGGAGATAGGTCATTACACGAGGCAGAAGGCAAGCTACAAGATGCTTTGGCAAATGAGAATGGATCCTCACCGCCAAGTCTTGGTGCTACCATATATGCATCAAGGTTTGCTGCCAATGCACTCCGAACCTTGCGACAAAATGGCAATCAAAACAGCCGAATGCCTCAGAGATTACTACCTCTGATGCCTCAGAAGCCCGCTGAGCCTGATTTCACTCAGAAACACTAG 2166 0.4146 MNTKGHKFVRFKDWSPESSFSIEQNNSTDNGYHERKLRPSVSTILESFRRRLESGSKKIKKLRKSSTVHPVSDGPPKKLAPRSKILDPQGTVLQKWNKIFVITCVMSVSVDPLFFYIPVIDDNEKCLDLDGTLQITASVLRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELIDDPWAIMKRYLSSHFIIDILSILPLPQVVVLFIIPNLKSSIPFVAKDLLEYIIFVQYVPRLLRIYPLFEEVTTTSGILTETAWAGAAYNLSLYMLASHMVGAFWYLFSVESELRCWRRVLKNAKISDNAYMSCEHHHDRTFVSLFNSSCTAIDPDDIKNSTVFNFGIYADALQSGVVESTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTYVGEIVFAIFIAIFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRRDVEQWMSHRMLPENLRERIRRYEHYKWQENRGVEEETLIHNLPKDLRRDIKRHLCLALLKKVPMFEKMDEQLMDAMCDKLKPVLYTEKSYIAREGDPVDEMLFIMRGNLATMTTNGGRTGFFNSSVLKAGDFCGEELLTWALDPNSSSNLPISTRTVEAISEVEAFALMADDLKFVASQYRRLHSKRLQHVFRFYSLQWRTWGACFIQAAWRRHYKKKGDRSLHEAEGKLQDALANENGSSPPSLGATIYASRFAANALRTLRQNGNQNSRMPQRLLPLMPQKPAEPDFTQKH 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0649 721 Gene3D Helix hairpin bin 419 483 - -
Glsi06g0649 721 SUPERFAMILY cAMP-binding domain-like 421 618 IPR018490 -
Glsi06g0649 721 CDD CAP_ED 492 611 IPR000595 -
Glsi06g0649 721 Gene3D - 98 416 - -
Glsi06g0649 721 Coils Coil 45 65 - -
Glsi06g0649 721 SUPERFAMILY Voltage-gated potassium channels 87 414 - -
Glsi06g0649 721 Gene3D Jelly Rolls 490 610 IPR014710 -
Glsi06g0649 721 ProSiteProfiles cAMP/cGMP binding motif profile. 492 576 IPR000595 -
Glsi06g0649 721 FunFam Cyclic nucleotide-gated ion channel 1 490 608 - -
Glsi06g0649 721 Pfam Ion transport protein 96 420 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi06g0649 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 71 717 - -
Glsi06g0649 721 Pfam Cyclic nucleotide-binding domain 512 607 IPR000595 -
Glsi06g0649 721 MobiDBLite consensus disorder prediction 692 721 - -
Glsi06g0649 721 SMART cnmp_10 492 623 IPR000595 -
Glsi06g0649 721 FunFam Cyclic nucleotide-gated ion channel 1 419 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0649 Glsi-ChrGlsi06 6191102 6196237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0649 1 717 Ion Channels AT5G53130 66.160 0.0 969