Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0646 ATGGAGGACTATAAGGTGTACAATCTCTTCGTGAAGGTCTTGGACGGAAAAACCCTAACCCTAAAATTCCCATCGCCGACCCTTTACGTCAATTCAATAAAGAATCGCCTTTTCGAAGCTACCCGAATACCCCCTCAACATCAGCGCCTCCTCACCGGCGTCCGACACCTCAGCGATGACGAATCTGTTATCTCCTGCTCCCCCGAAGGTGGGGACGCGTTCCCCACCGTCCATCTGCTGCTACGACTCGCCGGTGGCAAGGGAGGATTTGGGTCGCTTTTGCGTGGTGCGGCCACGAAGGCCGGACAGAAGAAGACGAACAACTTCGATGCTTGCAGAGATATGAGTGGACGAAGGTTGAGGCACGTGAACGCAGAGAAGAGATTGGAGGAGTGGAAGGCGGAGGAGTCGGAGAGGAAGTTGGAGAAGGCCGCGGAAGAGTTTCTAAAGAAGCAAATGAAGAAGGGTAAGAAGGGTGTGGGTGATGGCGAGGCGCAGAAGTATGTTGCTAAATATAGGGAGGTGTCTGAGCGGTGCGCCGCTGAGGTTGCCGAATCTGTGAAGGAGGCTTTGATGTCTATAAATGGGAAGAGAAAGGTTACAGATTCTGGAAAAGACAAAGCAGATGCGAAAAAGTTGAAGATATGGATGGGGAAGAGAAAATTAAATGGAAACGACAGTGATGATTCTGAAGAGGATGAAAGCGATGATGAAGGAGAAAATGAGAAATCTGTTATATTAAATAATGGGAATGAGTCAGATTCATATAAGGCTGAAGGCAGTTCAGGTTCAGTAACTGGTGGTGGGAAACAGGATGGAGATTCTTCTGGTGCGGGCTCATCTGAAAGTTGCTCTGAAGAAGAGAAAGAGATTTCTCTGGAGGGCAAATTGGAATCTAGTGGATCCCTGAGCATTGAATCTCTTCAGGCTGTGCCAAGCAATGTGGTTGAACCTGTGATATGTGATAAAAAGATGGAAAATGATGCCACTATGGCTTTATCAGAATCTGTAGTTTCTGGAATTGATGCAGAAGAAGCTGGAAATCAGGATGGTAGCGGTGCTGTATCTGACAAGCTAGATTTAGCTGGATCAGATGAGCATAAAGCATCAACTCAGGAAGAAACCTCTACTAGTGCCTGTGCTGCAGAAGTGGAGGAGCCTCTGAATTTTGATGTTATTAATTCAGCTGATGAACTTGAGGTTCTTGGCATGGAAAGGTTGAAGTCTGAACTGCAGGCACGAGGACTAAAATGTGGAGGCACTTTGCAGGAGCGTGCTGGTAGACTTTTCCTTTTAAAATCAACCCCGCTGGACAAGCTTCCTAAGAAGTTGCTTGCAAAGAAATGA 1347 0.4714 MEDYKVYNLFVKVLDGKTLTLKFPSPTLYVNSIKNRLFEATRIPPQHQRLLTGVRHLSDDESVISCSPEGGDAFPTVHLLLRLAGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAEESERKLEKAAEEFLKKQMKKGKKGVGDGEAQKYVAKYREVSERCAAEVAESVKEALMSINGKRKVTDSGKDKADAKKLKIWMGKRKLNGNDSDDSEEDESDDEGENEKSVILNNGNESDSYKAEGSSGSVTGGGKQDGDSSGAGSSESCSEEEKEISLEGKLESSGSLSIESLQAVPSNVVEPVICDKKMENDATMALSESVVSGIDAEEAGNQDGSGAVSDKLDLAGSDEHKASTQEETSTSACAAEVEEPLNFDVINSADELEVLGMERLKSELQARGLKCGGTLQERAGRLFLLKSTPLDKLPKKLLAKK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0646 448 SMART ubq_7 7 82 IPR000626 GO:0005515
Glsi06g0646 448 ProSiteProfiles Ubiquitin domain profile. 7 86 IPR000626 GO:0005515
Glsi06g0646 448 Pfam Silencing defective 2 N-terminal ubiquitin domain 7 153 IPR024974 -
Glsi06g0646 448 PANTHER SPLICING FACTOR SF3A-RELATED 8 447 - -
Glsi06g0646 448 Pfam Replication stress response SDE2 C-terminal 371 447 IPR025086 -
Glsi06g0646 448 Gene3D - 3 106 - -
Glsi06g0646 448 MobiDBLite consensus disorder prediction 244 282 - -
Glsi06g0646 448 SUPERFAMILY Ubiquitin-like 6 87 IPR029071 -
Glsi06g0646 448 MobiDBLite consensus disorder prediction 341 380 - -
Glsi06g0646 448 MobiDBLite consensus disorder prediction 215 309 - -
Glsi06g0646 448 Coils Coil 127 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0646 Glsi-ChrGlsi06 6175847 6178783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0646 388 447 C2H2 Transcription Factor Family AT5G06160 51.667 5.57e-10 59.3