Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0644 ATGATAATTAAGAGGACTATGAAAGTTGAAATGCCGAACCTGAAACGGTGTAAGCTAGAGGAGCAAGATTCCGAGGAGGATGGGTATGAGGTTGTTCCAAAGAAGCGTAGGGTTAATGGATTTTATTCTCTTGGTATGCCTGGTGAGGCTGAAGATTTCAGCAGCGGTTCAGGGTCTTGGTGCAGTGAAGGATCGTATTGGGCGAGTGAGGTTCTGTCGAATTCAAACTCCATGCAACTGAATAGTAGAACAGCAATGGAGCAAGGCTCAGCAGGGCTTCGGCCTCCACTATTGCGTTCGTCGCGAGGTCGCTCTCAAATGCTTCCGTCGAGGTTTAATGATTCGGTTCTTGATACATGGAAGAATGAAGGAATCAAAGTGGAGGACACGGACTCCAGCTTTGAAGATGATAATATTTTAGATGAAGATGGGGCGGGTATTAGTGGATTGGGGTTTGTGAAACAGGGAAAGAGAAATAATTATGGGTCCAAAAATTCTAAGTTCTATCCGTATCCTGACATGGAGGAGGAATCGGGCGTCCATGGCTTAGGTTTAAACTATTTTGACTACAGGAAGCATGCAAATTCGTTTAGTACCACTAGAACAACAGTTAACGGGAATCGTTCATCGGTAGTTAAAACTGAGAGTTATACGTCTGGACTAAGTTTTGAGGGCGTGGACCAAAAGCTTAAGCGAAATGCTGAAAAAAAGAAAGATATCTACAAACCAGAGGATTTTGCTTTGGGTGATATAGTTTGGGCAAAATGTGGAAAAAGATATCCGGCTTGGCCAGCTGTAGTGATTGATCCCATGTTGGAAGCTCCCAAGTCCGTACTGAGCTGTTGTGTTCCTGGTGCAATTTGTGTGATGTTTTTTGGGTATTCCAAAAATGGGAAGCAAAGGGACTACGCATGGGTGAAGCAGGGAATGATATTCCCTTTCAATGAATTCATGGGCAGATTCCAGGGGCAGACTCGGTTGTACAAGAGCAAACTGAGTGATTTTCAGACTGCACTGGAGGAGGCGTTGTTGGCAGAAGATGGGTTTCTGAATTCACACTTGGGAGCCGATCAAATAATGAATGTAGAAGCTCATCCCACTGGATTTATTGAGGCTACGAGTTCTTATGTTGATCAGGAATATTACTCTCAGGACCATGATATGAGACCTTGTGCTGGTTGTGGCATGGCTTTGCCATCCAAAACCATGAAGAAAATTAAGGACTCAAGTTCTGCAGCTCAACTTTATTGTAAACTTTGTGCCAAGTTACGAAAATCAAAACAGTATTGTGGCGTTTGCAAAAAGATTTGGCACCATTCAGATGGCGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGATAAAATCTCCAGTAAACTTTTTAAGGATCTGGAAAATACAGATTACTATTGCCCAGATTGCAAGGCAAAATTAAATTGTAAATTTCCAGCATCACAAACATACAAATCAAAAATCAAATCAATAGAAAATAGCCAAAAGTCTGTTATACCTGATAAGGTAACTGTGGTGTGCAATGGCATGGAAGGATTTTACATTCCGAAGCTTCATCTTGTTATGTGCAAGTGTGGTTCATGTGGGGTACGGAAGCAGACATTGAGTGAATGGGAACGGCATACTGGTTGCAGAGCTAAAAAATGGAAATATAGTGTGAAAGTAAAGAGTACAATGCTTCCACTGGAAAAATGGATCACAGAACACAATACACAAAGTGAAGTTTCTTTGCGGTTAGATCAGCAGCAGGTACTTGCCTTTCTGCAAGAGAAGTATGAACCGGTATATCCAAAATGGACCACAGAAAGATGTGCCATTTGTAGATGGGTTGAAGATTGGGATGATAACAAAATTATCATCTGCAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGCGCAAAGAATGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTGTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGTCCCGTTAAAGGTGGTGCTCTAAAACCAACCGATGTTGAGATGCTGTGGGTTCATGTCACATGTGCTTGGTTTCGGCCTGAAGTTGGATTCTCCAACCATGAGACGATGGAACCTGCCTTTGGAATCCTTAAAATTCCTCCAAGTTCCTTTTTGAAGACTTGCGTTATCTGTAAACAAAGCCATGGTTCCTGCACAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTGATGTGCGCGTCTAGAGCGGGATACAGCATGGAACTGCATTCTGTGGAGAAGAATGGAGTTCAGATATCAAAGAAGCTAATATTTTGTGCAGTTCACAGGCTTCCAAACCCAGATTCTGTAATGGTTGTACATACACCCCTGGGGGTTTTCTCTCCAAGAACTTCCCTGCAAAATCATAAGGGATGCTTCAGGGGATCAAGGCTGGTATCATCAAAGAATGTAGAACTTCTTGAATCTTCAACCTCTGAGACTAATGAGTTTGAACCACTCTCTGCCGCAAGATGTCGTGTTTATAGAAAGTCTTCCAAGAAGAAGGCTGATGTCCCAATAATACATCTATTGGGGGGACCAAGCCGTCATTCTTTAAGTTCAATAATTCAATTGAACAGCTATAAGGACTCTGAAGATTCTAAAGTATTTACTTCGTTCAAGGAGCGTCTTCACCATTTGCAGAAAACTGAAAACCATAGAGTTTGCTTTGGAAAATCGGGTATACATGGATGGGGCCTCTTTGCACGTAGAGATATACAAGAAGGGGAAATGGTTGCTGAGTATCGTGGTGAGCAGGTGAGGCGTAGTGTTGCTGATATGAGGGAGGCTAAGTATCGTTCAGAAGGCAAAGACTGTTATCTGTTCAAGATAAGTGAGGAAGTGGTCATTGATGCAACACATAAGGGCAATATAGCACGCTTGATAAACCACTCTTGCATGCCTAACTGCTATGCAAGGATTATGAGTCTGGGTGATGAGGAGAGCCGAATTGTTCTTATAGCCAAAACCAATGTTTCTGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGATGAACTGAAAGTTCCCTGCCTTTGTAAATCCCCCAATTGTAGGAAATTTATGAACTAG 3138 0.4248 MIIKRTMKVEMPNLKRCKLEEQDSEEDGYEVVPKKRRVNGFYSLGMPGEAEDFSSGSGSWCSEGSYWASEVLSNSNSMQLNSRTAMEQGSAGLRPPLLRSSRGRSQMLPSRFNDSVLDTWKNEGIKVEDTDSSFEDDNILDEDGAGISGLGFVKQGKRNNYGSKNSKFYPYPDMEEESGVHGLGLNYFDYRKHANSFSTTRTTVNGNRSSVVKTESYTSGLSFEGVDQKLKRNAEKKKDIYKPEDFALGDIVWAKCGKRYPAWPAVVIDPMLEAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWVKQGMIFPFNEFMGRFQGQTRLYKSKLSDFQTALEEALLAEDGFLNSHLGADQIMNVEAHPTGFIEATSSYVDQEYYSQDHDMRPCAGCGMALPSKTMKKIKDSSSAAQLYCKLCAKLRKSKQYCGVCKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENTDYYCPDCKAKLNCKFPASQTYKSKIKSIENSQKSVIPDKVTVVCNGMEGFYIPKLHLVMCKCGSCGVRKQTLSEWERHTGCRAKKWKYSVKVKSTMLPLEKWITEHNTQSEVSLRLDQQQVLAFLQEKYEPVYPKWTTERCAICRWVEDWDDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVGFSNHETMEPAFGILKIPPSSFLKTCVICKQSHGSCTSCCKCATYFHVMCASRAGYSMELHSVEKNGVQISKKLIFCAVHRLPNPDSVMVVHTPLGVFSPRTSLQNHKGCFRGSRLVSSKNVELLESSTSETNEFEPLSAARCRVYRKSSKKKADVPIIHLLGGPSRHSLSSIIQLNSYKDSEDSKVFTSFKERLHHLQKTENHRVCFGKSGIHGWGLFARRDIQEGEMVAEYRGEQVRRSVADMREAKYRSEGKDCYLFKISEEVVIDATHKGNIARLINHSCMPNCYARIMSLGDEESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCLCKSPNCRKFMN 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0644 1045 SMART PWWP_4 246 315 IPR000313 -
Glsi06g0644 1045 Gene3D - 234 350 - -
Glsi06g0644 1045 ProSiteProfiles Extended PHD (ePHD) domain profile. 665 780 IPR034732 -
Glsi06g0644 1045 Pfam PHD-finger 626 660 - -
Glsi06g0644 1045 CDD PHD_TCF19_like 430 480 - -
Glsi06g0644 1045 PANTHER PHD FINGER PROTEINS 45 461 - -
Glsi06g0644 1045 FunFam Histone-lysine N-methyltransferase 663 782 - -
Glsi06g0644 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 781 IPR013083 -
Glsi06g0644 1045 ProSitePatterns Zinc finger PHD-type signature. 614 659 IPR019786 -
Glsi06g0644 1045 Gene3D SET domain 826 1045 IPR046341 -
Glsi06g0644 1045 CDD PWWP_AtATX3-like 249 349 - -
Glsi06g0644 1045 ProSiteProfiles Zinc finger PHD-type profile. 611 662 IPR019787 -
Glsi06g0644 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 662 IPR013083 -
Glsi06g0644 1045 SMART PHD_3 613 660 IPR001965 -
Glsi06g0644 1045 SMART PHD_3 724 780 IPR001965 -
Glsi06g0644 1045 SMART PHD_3 429 481 IPR001965 -
Glsi06g0644 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 486 IPR013083 -
Glsi06g0644 1045 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1045 IPR025780 -
Glsi06g0644 1045 SUPERFAMILY FYVE/PHD zinc finger 612 676 IPR011011 -
Glsi06g0644 1045 ProSiteProfiles Zinc finger PHD-type profile. 427 483 IPR019787 -
Glsi06g0644 1045 Pfam PWWP domain 249 344 IPR000313 -
Glsi06g0644 1045 Pfam PHD-finger 429 482 IPR019787 -
Glsi06g0644 1045 CDD PHD_ATX3_4_5_like 613 659 IPR042011 -
Glsi06g0644 1045 ProSiteProfiles SET domain profile. 903 1020 IPR001214 GO:0005515
Glsi06g0644 1045 ProSiteProfiles PWWP domain profile. 248 317 IPR000313 -
Glsi06g0644 1045 SMART set_7 903 1026 IPR001214 GO:0005515
Glsi06g0644 1045 Pfam PHD-zinc-finger like domain 667 779 - -
Glsi06g0644 1045 ProSiteProfiles Post-SET domain profile. 1029 1045 IPR003616 -
Glsi06g0644 1045 FunFam Histone-lysine N-methyltransferase 877 1045 - -
Glsi06g0644 1045 SUPERFAMILY FYVE/PHD zinc finger 427 489 IPR011011 -
Glsi06g0644 1045 MobiDBLite consensus disorder prediction 84 108 - -
Glsi06g0644 1045 SUPERFAMILY Tudor/PWWP/MBT 239 347 - -
Glsi06g0644 1045 SMART PostSET_3 1029 1045 IPR003616 -
Glsi06g0644 1045 SUPERFAMILY SET domain 896 1042 IPR046341 -
Glsi06g0644 1045 CDD SET_SETD1-like 892 1041 - -
Glsi06g0644 1045 Pfam SET domain 914 1019 IPR001214 GO:0005515
Glsi06g0644 1045 CDD ePHD_ATX3_4_5_like 668 779 IPR041955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0644 Glsi-ChrGlsi06 6161245 6169400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0644 387 454 EF-hand Containing Proteins AT5G28340 57.353 5.45e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi06g0644 zf-HC5HC2H_2 5.2e-28 CL0390