Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0635 ATGGCTGCAAGTTCGGCTACTTTTGCTAGGGCACCTGTCGGTGGTGGTGGACCTTGTGAACCAGTTATTGCTTCTCCAACCCCACCTTCAAGTGATAGAATGGAATCGAGTGGCATTGATAGTCCTGTATCATCCTTGACCATGATGGATGAGAATGAGCATCTCCTTCAGTTTTCTTCAATCACGAAGCTGCATAACAATGGTCCCAGTACCACCAGCGTCCATGAGCTTCTTGAATGCCCTGTTTGCACCCATTCAATGTACCCTCCAATCCATCAGTGCCACAATGGGCATACGCTTTGCTCAACTTGTAAGACAAGGGTACACAACCGATGTCCGACCTGTAGACAGGAACTTGGGGATATAAGGTGTCTAGCACTGGAGAAAATAGCAGAATCACTTGAACTGCCTTGCAGATACAACTACCTTGGATGTTCAGAGATATTTCCCTACTACAGCAAACTCAAACATGAGACTATTTGTAACTTCAGACCATACAACTGCCCCTATGCTGGGGCAGACTGTTCTGTCGTTGGGGATATTCCATACCTTGTTGCTCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCTAATCCTGTGGAAGTAGAAAATGCTACATGGATGTTAACTGTCTTCCACTGCTTTGGACAGTACTTTTGTCTCCATTTCGAAGCCTTCCAGCTTGGTATGGCTCCTGTTTACATGGCATTCTTACGTTTCATGGGTGACGAAAGAGAAGCCCGGAGCTACTGCTACAGCCTGGAGATAGGAGGAAATGGACGTAAACAAATATGGGAGGGCAACCCACGAAGCATTAGGGATAGCCATAAGAAAGTTAGAGACAGCCATGATGGTCTCATAATATACCGTAACATGGCACTTTTCTTCTCAGGTGGGGATAGGAAAGAGTTGAAGCTACGAGTCACGGGAAGAATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTGTGCATACCCAACCTATGTAGTTAA 1029 0.4568 MAASSATFARAPVGGGGPCEPVIASPTPPSSDRMESSGIDSPVSSLTMMDENEHLLQFSSITKLHNNGPSTTSVHELLECPVCTHSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYNYLGCSEIFPYYSKLKHETICNFRPYNCPYAGADCSVVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPVEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARSYCYSLEIGGNGRKQIWEGNPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0635 342 MobiDBLite consensus disorder prediction 29 43 - -
Glsi06g0635 342 SUPERFAMILY TRAF domain-like 133 325 - -
Glsi06g0635 342 ProSiteProfiles Zinc finger RING-type profile. 80 116 IPR001841 -
Glsi06g0635 342 SUPERFAMILY RING/U-box 70 119 - -
Glsi06g0635 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 132 IPR013083 -
Glsi06g0635 342 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 200 321 IPR008974 GO:0005515
Glsi06g0635 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 188 IPR013083 -
Glsi06g0635 342 FunFam E3 ubiquitin-protein ligase SINAT5-like 189 321 - -
Glsi06g0635 342 MobiDBLite consensus disorder prediction 1 43 - -
Glsi06g0635 342 CDD RING-HC_SIAHs 78 116 - -
Glsi06g0635 342 FunFam E3 ubiquitin-protein ligase SINAT3 130 188 - -
Glsi06g0635 342 ProSiteProfiles Zinc finger SIAH-type profile. 133 193 IPR013010 GO:0008270
Glsi06g0635 342 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 60 327 - -
Glsi06g0635 342 CDD Sina 194 322 - -
Glsi06g0635 342 Pfam Seven in absentia protein family 122 321 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0635 Glsi-ChrGlsi06 6076706 6083257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0635 60 328 C3H Transcription Factor Family AT2G41980 76.208 2.00e-157 441