Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0632 ATGAATGGGTTTCATTTGGATTTCTTTGGCATTAATTACACAGGTTTTGAAAATTTCCTGGAAGGAACGTTTAAAAATGTAGATGTTAGAGATTATGGACATGTGAGTGCTGTTTGTGTTGTGAATTCCAATTTGATTCAGTTGGTCAATGTACTTACCCACACAACCAAGGTGAATACAGATGCTTATCGGAAAGACACAATAAAAAAATTGCGGAAGGAATATGAAAAAGAAGACATGCGTGAACTTTATAGTGAAGCACCTAATGATGTTGATGGAAAGGCAGAGAATGGAGTTAACAGTTTTTCTTCTAGTAGCCAAATAGATGAATGTATTTCATTGGTATCTGATGGCTTGAGTGGAAAGTTAGAAACACAAAGCGCAGAACAATATTATAAGAGTGGAAACTGCTCCAATGTTGCCAAAAGGAGCTCTTCTGCAGAAGATGGTGTTAGTATAATATCTGCTGACGTTTCAGATCATGCCAAGACTTTGGGACTTGAACATGTTCAATCTACAGAGTCAAGAGAATTAAAGCAAGACCTGGGAAATGATTCTGTAGAAACTAATAATGGAGCTTTGGCTGTCCTCCTAGGTGGTGCTGTTTGGGATATCTTCCGCCGGCAAGATGTGCCAAAGCTAATTGAGTACTTAAGAAAGCACAAGAAGGAATTCCGTCATATCAACAACCATCGTGTAAATTCTGTTATACATCCCATTCATGATCAGACAATTTTCCTAAATGAGAGGCATAAGAAACAACTGAAACAGGAGTTCAATATTGAACCCTGGACTTTTGAGCAACACCTTGGTGAGGCTGTTTTTATTCCTGCAGGATGTCCCCATCAAGTAGCACTTGACTTTGTTTCTCCGGAAAATATTGAAGAATGTTTACGACTAACTGAAGAGTTTCGTTTGCTCCCAAAAAACCACAGAGCCAAGGAGGACAAACTGGAGGCAATTAAGTTAGGTGATCTGGTTATGGATATAGAAGACTGCCATCTTCCAGTAAATTAA 1017 0.3854 MNGFHLDFFGINYTGFENFLEGTFKNVDVRDYGHVSAVCVVNSNLIQLVNVLTHTTKVNTDAYRKDTIKKLRKEYEKEDMRELYSEAPNDVDGKAENGVNSFSSSSQIDECISLVSDGLSGKLETQSAEQYYKSGNCSNVAKRSSSAEDGVSIISADVSDHAKTLGLEHVQSTESRELKQDLGNDSVETNNGALAVLLGGAVWDIFRRQDVPKLIEYLRKHKKEFRHINNHRVNSVIHPIHDQTIFLNERHKKQLKQEFNIEPWTFEQHLGEAVFIPAGCPHQVALDFVSPENIEECLRLTEEFRLLPKNHRAKEDKLEAIKLGDLVMDIEDCHLPVN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0632 338 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 48 322 IPR045109 GO:0032454|GO:0033169
Glsi06g0632 338 SMART cupin_9 75 305 IPR003347 -
Glsi06g0632 338 SUPERFAMILY Clavaminate synthase-like 190 319 - -
Glsi06g0632 338 Gene3D Cupin 132 314 - -
Glsi06g0632 338 Pfam JmjC domain, hydroxylase 200 284 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0632 Glsi-ChrGlsi06 6032155 6034802 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi06g0632 JmjC 2.2e-13 CL0029