Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0629 ATGAAGATTGAGGTGGGTATAAGAGGTGTGGTGTGGAACGATGACGACCGAGCCATGGTTGCGGCGGTTCTGGGCCCAGGAGCTTTCGATTACTTGATTAACAACTCTGTTTCGAATGAGAATCAGTTAATGCCCATGGGGAATGACGAAAATTTGCCGAACAAGCTCTCGGATCTCGTAGACCATCCCAACGTATCGAATTTCAGCTGGAACTATGCGATTTTTTGGCAAATTTCGCAGTCAAAATCTGGGGAATGGGTTTTGGGTTGGGGAGATGGGTGTTGCAGGGAACCCAAGGAGGGAGAAGAGGGAGGAGTTAGAGGATTTCCCAGCCTTCGCCTCGAGGATGAGATGCAGCAAAGGATGAGGAAGAGGGTGTTGCAGAAACTGCGCACAGCTTTTGGGGATTTAAGTGAGGACAATTATGCTTATGGATTAGACCGAGTTACTGATACTGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCTCGTGGGCATGGTGGCCCAGGTAAGTGCCTTGTTTCCGGGAAGCATTTATGGCTCTCTGATGCACTGAAATCTAGCTTTGATTATTGTGTGCGATCCTTTCTGGCTAAATCAGCTGGAATTCAGACTATCGTTTTAATCCCTACTGATATGGGAGTGTTGGAACTGGGTTCTGTGAGGATGATAGCAGAGAGCCTAGAATTGTTGCAGGCAATAAAATCGGCGTTCTCTACCCAATCTACTTTCCCCAGGGTCAAGCCACTTTCACCTATGCCTGTGGTGAATGAGAAGAGAGATGAAAATGCCCTTTTTTCTGGTTTGGCAATGGTGGATAAAGTAGGAATTCCAAAGATTTTTGGGCAGGATTTGAACTCTCCAAATTCGGGACTTACCCATTTTAGGGAGAAACTTGCTGTTAGGAAAATGGAGGATAAGCCATGGGGAGGTCAACCCAATGGGAATAGCATTAGGTTTCCAAATGCTCAAAGTGGTCCTCATGGATCAAATTGGATTGCTAATCATGGTGTAAGACAAGCTAGCCCTGCAGAAATTTATGCTCCTAGGCCGTTGGCAAGCAATGTGCCGGACCTAGTTAATGGAGTCCAACAAGATTTTCGGCTTAACAACTATCAACCGCAAAGGCAGGTGCAAATGCAAATTGATTTCTCAGGAGCCACTTCAAGGCCTTCTGTGAGACCAATTTGTGCTGAAGCAGAGGTTTCTGATGTCGAGGCTTCATGCAAGGAGGAGCAGCCGGGTGCAGCAGATGAAAGGAGGCCCAGGAAACGGGGTAGAAAGCCTGCAAATGGAAGGGAAGAACCCCTGAATCATGTCGAAGCAGAGAGGCAAAGGCGTGAGAAGCTGAACCAACGGTTTTACGCGTTACGATCTGTTGTCCCCAATATCTCTAAGATGGACAAGGCCTCTTTACTGGGAGATGCCATTGCTTATATCAATGAGCTTCATGCAAAACTCCAGACCTTGGAATCTGAGAGAGAGGGATTTGGAAGCACTTCAGGGGATGCATTAGTGTTGGAGGTCAACCCGAACACACAAAATCTGAATCAAGCTCCTGATGTGGATATTCAAGCTGCCCAAGATGAGGTCATTGTAAGGGTGAGCTGCGCTCTTGATTCTCACCCTGTTTCAAAAGTAATCCAAGCATTCAAAGAGGCGAACATTAGTGTTGTTGAGTCAAAACTTGATGCCGCTAATGATACTGTCTTCCATACGTTTGTAATCAAGTCTCAAGGATCTGAGCAGCTGACAAAGGAGAAGTTGATTGCAGCTTTTTCCCCAGAATCTAACTCCTTGCAGCCATTGTCTTCAGCTGGGTAG 1830 0.4639 MKIEVGIRGVVWNDDDRAMVAAVLGPGAFDYLINNSVSNENQLMPMGNDENLPNKLSDLVDHPNVSNFSWNYAIFWQISQSKSGEWVLGWGDGCCREPKEGEEGGVRGFPSLRLEDEMQQRMRKRVLQKLRTAFGDLSEDNYAYGLDRVTDTEMFFLASMYFSFPRGHGGPGKCLVSGKHLWLSDALKSSFDYCVRSFLAKSAGIQTIVLIPTDMGVLELGSVRMIAESLELLQAIKSAFSTQSTFPRVKPLSPMPVVNEKRDENALFSGLAMVDKVGIPKIFGQDLNSPNSGLTHFREKLAVRKMEDKPWGGQPNGNSIRFPNAQSGPHGSNWIANHGVRQASPAEIYAPRPLASNVPDLVNGVQQDFRLNNYQPQRQVQMQIDFSGATSRPSVRPICAEAEVSDVEASCKEEQPGAADERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELHAKLQTLESEREGFGSTSGDALVLEVNPNTQNLNQAPDVDIQAAQDEVIVRVSCALDSHPVSKVIQAFKEANISVVESKLDAANDTVFHTFVIKSQGSEQLTKEKLIAAFSPESNSLQPLSSAG 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0629 609 CDD bHLH_AtAIB_like 433 507 - -
Glsi06g0629 609 MobiDBLite consensus disorder prediction 405 447 - -
Glsi06g0629 609 SMART finulus 442 491 IPR011598 GO:0046983
Glsi06g0629 609 Pfam Helix-loop-helix DNA-binding domain 440 485 IPR011598 GO:0046983
Glsi06g0629 609 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 439 498 IPR036638 GO:0046983
Glsi06g0629 609 MobiDBLite consensus disorder prediction 317 336 - -
Glsi06g0629 609 Gene3D - 429 500 IPR036638 GO:0046983
Glsi06g0629 609 MobiDBLite consensus disorder prediction 311 336 - -
Glsi06g0629 609 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 436 485 IPR011598 GO:0046983
Glsi06g0629 609 PANTHER MYC 39 594 IPR045084 GO:0003700|GO:0006355
Glsi06g0629 609 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 54 240 IPR025610 -
Glsi06g0629 609 FunFam Transcription factor bHLH13 429 502 - -
Glsi06g0629 609 MobiDBLite consensus disorder prediction 406 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0629 Glsi-ChrGlsi06 5964161 5965990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0629 5 609 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.024 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi06g0629 bHLH-MYC_N 1.8e-53 CL0161