Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0625 ATGGCACATCTGGGGTGTAATCTCAAGGGCCCGACCAGTTCTCATCCGGAAACAGGTTTGGAAGATGACGATCTGTATACAGAGTTATGGAAGTTGTGTGCAGGGCCTTTGGTGGATGTTCCTTGTGGTGGAGAGAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCAACGAATCAGGAATTGAACCAACAAATTCCCCATTTCAACATTTCGTCTAAGATTCTATGCCGTGTCATGGACATTCAGTTACTGGCGGAACAAGACACTGATGAAGTTTATGCTCGTATCACTTTGCTTCCAGAATCAGATCAAACTGAGCCTTCAAGTCCAGATCCATGTCCACCTGAGAGTCGGACACAAACTCTTCATTCATTTTGCAAGATATTAACGGCATCTGATACTAGCACACATGGAGGATTTTCAGTTCTGCGGAAGCATGCTAATGAGTGCCTACCTCAATTGGACATGACTCAATCAACCCCAACTCAGGAGTTGGCAGCGAAGGATCTTCATGGGTTTGAGTGGAAGTTTAAGCATATTTTCAGAGGTCAACCAAGGAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTCACTTCCAAAAGATTGGTAGCTGGAGATGCTTTTGTGTTTCTAAGGGGAGAGAATGGGGAACTCAGAGTTGGTGTGCGGCGTCTTGCTAGGCAACAGTCTCCAATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTACTTGCCACTGCTTCCCACGCTGTTGCAACTCGTACCATGTTTGTGGTTTATTACAAACCAAGGACTAGACAGTATATAATTGGTCTGAACAAATATCTGGAGGCAATGAACAATAAGTTTTCTGTTGGAATGCGTTTCAAGATGAGATTTGAGGGAGAGGACTCACCTGAGAGAAGATTTTCGGGTACCATTGTTGGCGTTGAGGATGTATCTCCAGAATGGCCAGACTCCAAGTGGCGGTCATTGAAGGTACAATGGGATGAACCAGCAACAATTCCAAGGCCAGAGAGGGTTTCTCCTTGGGAGATAGAACCTTTTGTAGCTTCTGCAGCACTAAATGTCATTCAACCGGCAGTAAAGAGCAAAAGGTCCCGGCCTGCTGATGGGCCCTCTTCCGAAATAACTACCAATTCAGCTGCTTCAGCTTTCTGGTATCACGGATCATCCCAGTCCAATGAGCTTGCTCAAATAGGTGTTGCTGCAGAAGCTCAAAACAATGAAAACCAGGTTGTATGGTCTCTGAGGCAGAAAGAAATGAATAGCAATTCTATGAATAACTCTAGAGTCCGGGTGGAAGGAATGTGGTCTTCTTCACATTTAAGTGTCTCTTCAAACCTTTTTCCTGACCTGAAAAACAACAAAGCTGTAGCAGCACAATCTTCTATCTCCGGTCATCCTCCAGTTTCATCTTGGCCAAATGATGGCCCAGTATATGACCAAGTGGAAAATGGGAAGAAATCTGAAAATTCTGCCAGTTGCCGGATATTCGGAGTTAATTTGACTAACAACTCAAATAACGTGGCTCCTCCAGAGAAAGAACTGGGAGGGTGTGCAACTACCCTTCCTAGTGGTCCCAAACAGTCTATTCCTGCTTCTACATGTGAAACTGAGAGGAGTCAGAGCCCCAATTGTTCACTGTCCAAACAGGAGCAGAAGCAAGACACATCTAATGCATCACCAAACGAGAGGCAGAGCAGGCAGGCATCTTTACCATCTCCGAGGACAAGGACAAAGGTGCAAATGCAAGGTGTGGCTGTTGGTCGTGCGGTTGACTTGTCCTTGTTGAACAGCTACAATGACCTTATCGATGAGCTGGAGAAATTGTTTGACATAAAAGGAGAGCTTCATTCACAGGAAAAATGGGCAGTCACTTTTACTGATGATGAGAATGACATGATGCTTGTGGGAGATGATCCATGGCTGGAGTTCTGTAATATGGTCAAGAAGATCATCATTTATTCAAGTGAGGAAGTGAAGAAGCTGAATGCAAAATGCAAGATTCCTGCATCGTCGTCAGAAGGTGGAGAGACTCTGATGAGCATGAACTCAGAGAATAAGGATGAAACTCAATAA 2109 0.449 MAHLGCNLKGPTSSHPETGLEDDDLYTELWKLCAGPLVDVPCGGERVFYFPQGHMEQLQASTNQELNQQIPHFNISSKILCRVMDIQLLAEQDTDEVYARITLLPESDQTEPSSPDPCPPESRTQTLHSFCKILTASDTSTHGGFSVLRKHANECLPQLDMTQSTPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVATRTMFVVYYKPRTRQYIIGLNKYLEAMNNKFSVGMRFKMRFEGEDSPERRFSGTIVGVEDVSPEWPDSKWRSLKVQWDEPATIPRPERVSPWEIEPFVASAALNVIQPAVKSKRSRPADGPSSEITTNSAASAFWYHGSSQSNELAQIGVAAEAQNNENQVVWSLRQKEMNSNSMNNSRVRVEGMWSSSHLSVSSNLFPDLKNNKAVAAQSSISGHPPVSSWPNDGPVYDQVENGKKSENSASCRIFGVNLTNNSNNVAPPEKELGGCATTLPSGPKQSIPASTCETERSQSPNCSLSKQEQKQDTSNASPNERQSRQASLPSPRTRTKVQMQGVAVGRAVDLSLLNSYNDLIDELEKLFDIKGELHSQEKWAVTFTDDENDMMLVGDDPWLEFCNMVKKIIIYSSEEVKKLNAKCKIPASSSEGGETLMSMNSENKDETQ 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0625 702 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Glsi06g0625 702 MobiDBLite consensus disorder prediction 1 20 - -
Glsi06g0625 702 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Glsi06g0625 702 FunFam Auxin response factor 128 232 - -
Glsi06g0625 702 FunFam Auxin response factor 291 362 - -
Glsi06g0625 702 Gene3D - 583 674 - -
Glsi06g0625 702 ProSiteProfiles PB1 domain profile. 586 678 IPR000270 GO:0005515
Glsi06g0625 702 SMART B3_2 130 232 IPR003340 GO:0003677
Glsi06g0625 702 MobiDBLite consensus disorder prediction 513 592 - -
Glsi06g0625 702 MobiDBLite consensus disorder prediction 473 500 - -
Glsi06g0625 702 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi06g0625 702 MobiDBLite consensus disorder prediction 680 702 - -
Glsi06g0625 702 Gene3D - 291 363 - -
Glsi06g0625 702 SUPERFAMILY DNA-binding pseudobarrel domain 123 259 IPR015300 -
Glsi06g0625 702 CDD B3_DNA 128 230 IPR003340 GO:0003677
Glsi06g0625 702 Gene3D - 127 231 IPR015300 -
Glsi06g0625 702 MobiDBLite consensus disorder prediction 685 702 - -
Glsi06g0625 702 Pfam AUX/IAA family 560 622 IPR033389 -
Glsi06g0625 702 Pfam AUX/IAA family 627 671 IPR033389 -
Glsi06g0625 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 674 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi06g0625 702 SUPERFAMILY CAD & PB1 domains 580 662 - -
Glsi06g0625 702 FunFam Auxin response factor 581 674 - -
Glsi06g0625 702 MobiDBLite consensus disorder prediction 533 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0625 Glsi-ChrGlsi06 5898883 5903029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0625 25 673 B3 DNA Binding Superfamily AT4G23980 58.321 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi06g0625 B3 6.9e-21 CL0405