Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0620 ATGGATATGGAGGCTGTGGGAAAATGGAGAAGCCATAATCATCAACCATGCGCAGCTTGCCGGATGCTACGCCGGAGATGCGACACTAAGTGCCCACTTTCTCCATATTTCCCTGCTCACGAGATTCACAAGTTTGCTGGTGTTCATAGGGTGTTTGGTACTAGCAACGTTATCAAAATGATTCAGATGGTGGAGGAGACACAGAAGGACGATGCAGTTAAAGCCATAGTCTATGAGGCCACGGCACGGCTGAGAGACCCAGTTTATGGCAGCACTGGAGCTATTTTGCAGCTGCAAAAGATGGTTCAAGAACACAAAGGGGAGCTGGAATCAATAAGAGCTAGGGTTTCAGAGATGCAAGAACAAAGAGACCGATTGTTGAGAATTCACAAGAACCTTCATAATCTTGATCCTATCTTTCCCAACAACGACGACCCTAAATTTTTTGATGATTGTCGCGGTTTTTTATCAGTAGAGGTTGATCCTAACATGGCCCTTAATGACCCACTTGAATTTCCTGTAGAAGATAACTGGGTCTTGTAG 543 0.4512 MDMEAVGKWRSHNHQPCAACRMLRRRCDTKCPLSPYFPAHEIHKFAGVHRVFGTSNVIKMIQMVEETQKDDAVKAIVYEATARLRDPVYGSTGAILQLQKMVQEHKGELESIRARVSEMQEQRDRLLRIHKNLHNLDPIFPNNDDPKFFDDCRGFLSVEVDPNMALNDPLEFPVEDNWVL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0620 180 Coils Coil 95 129 - -
Glsi06g0620 180 Pfam Lateral organ boundaries (LOB) domain 16 112 IPR004883 -
Glsi06g0620 180 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Glsi06g0620 180 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0620 Glsi-ChrGlsi06 5852544 5853588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0620 16 170 AS2 family AT1G07900 44.586 2.94e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Glsi06g0620 LOB 8.9e-37 No_clan