LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g0617	ATGGGAAGAGCTCCATGTTGTTCAAAAGTAGGGTTGCATAGAGGTCCATGGACTTCTAAAGAGGATGCATTGCTCGCAAAGTATATTCAAGCTCATGGAGAAGGTCAGTGGAGGTCCCTTCCAAAAAGAGCTGGGCTTCTCAGATGTGGGAAAAGTTGCAGACTGAGATGGATGAACTATCTCAGACCAGACATAAAGAGAGGAAACATAACACCAGAAGAAGATGACCTCATAATCAGAATGCATTCTCTTCTTGGAAACAGATGGTCCCTAATTGCAGGAAGATTACCAGGAAGAACAGATAATGAAATAAAAAACTACTGGAATACCCATCTCAGCAAAAGGCTCAGAAAACAAGGAACTGATCCAAACACACACACAAAATTATCATCGGATCAAGAAATTACAGCCAAGAGGAGCAATACCAAGAAGAAGAAGAAGCAGCAGACCAAGAATCAAAAAATGGGCAGTAGAGAAAATCTTGTGGAGGAGAAAGAGAAGACTATTTATTTGCCGAAACCCATTAGGGTTTCGGCTTTAACGATACAAAGAACGGATAGCAGAACTTTCACGTTGGATTCTAATTCAGCTAGTGGTTCTTCGAGCCAAGACAAGGAAGAAGAAAGTCAAGAAGATCAAAAGGAGGTGAATTTGGCTTGGGCAGAAAATGATGGGTTTGGGTTTTTTATTGAGGATCATGACCTAGTCAATGGTTCACAAGATCACATGGAATGCCATGGCACTTTGGAGAAGCTATATGAAGAGTATTTTCAGCTTTTGAAGAGTGACGAAAACGTTCAAGAGGAATTGGATTCTTTTGCTCAATCTTTATTGATCTAA	840	0.4048	MGRAPCCSKVGLHRGPWTSKEDALLAKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKRLRKQGTDPNTHTKLSSDQEITAKRSNTKKKKKQQTKNQKMGSRENLVEEKEKTIYLPKPIRVSALTIQRTDSRTFTLDSNSASGSSSQDKEEESQEDQKEVNLAWAENDGFGFFIEDHDLVNGSQDHMECHGTLEKLYEEYFQLLKSDENVQEELDSFAQSLLI	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g0617	279	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Glsi06g0617	279	SMART	sant	66	114	IPR001005	-
	Glsi06g0617	279	SMART	sant	13	63	IPR001005	-
	Glsi06g0617	279	CDD	SANT	16	61	IPR001005	-
	Glsi06g0617	279	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Glsi06g0617	279	MobiDBLite	consensus disorder prediction	190	214	-	-
	Glsi06g0617	279	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Glsi06g0617	279	FunFam	Myb transcription factor	11	67	-	-
	Glsi06g0617	279	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Glsi06g0617	279	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Glsi06g0617	279	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Glsi06g0617	279	Coils	Coil	147	167	-	-
	Glsi06g0617	279	Gene3D	-	14	66	-	-
	Glsi06g0617	279	MobiDBLite	consensus disorder prediction	115	165	-	-
	Glsi06g0617	279	Gene3D	-	71	168	-	-
	Glsi06g0617	279	CDD	SANT	71	112	IPR001005	-
	Glsi06g0617	279	FunFam	MYB transcription factor	68	129	-	-
	Glsi06g0617	279	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	221	-	-
	Glsi06g0617	279	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g0617	Glsi-ChrGlsi06	5823996	5825622	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g0617	4	133	MYB Transcription Factor Family	AT3G13540	70.769	9.96e-70	214

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi06g0617		Myb_DNA-binding	9.5e-14	CL0123