Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0616 ATGCAAGCTACCTTTTTGGCATTCAATTTGCATTCAAAGGCAATGCTCAAAGTCAAAATGAAAACCCCACTTCCACCGTCCTTACTAACCCTCATGCAGGCTGATCCTGCAGTAGCCCAGGTTAGATTTGCGGGACCAATGGAAGGGATAGCTCCTAATTCATGCACAAAGCCAGTGTCAGAGAAGAAGGCGAGGCCACAAGAGCAGCTGAATTGTCCGAGGTGCAATTCAACCAACACTAAGTTTTGCTATTACAACAACTATAGCCTCACACAACCCAGATACTTCTGCAAGACTTGTAGAAGGTACTGGACGGAAGGTGGATCTCTCCGGAACGTCCCGGTCGGAGGCGGTTCCAGAAAGAACAAGAAGATACCGCCATCATCATCTTCATCAGCAGCAGCAGCAGCAGCAGCCACAGCTTCATCTTCAAAGGTTCCTGACTTGAACCCACCAACCCAAAACCCTAAAATGCATGGAGGCCAAGATCTTAATCTGGGATTCCCAGATATGGATCAGAAGTATCATCATGGAATTACCTCGTATGTTGATAGTTCTAATTCTTCTTCTGCTCCAACTACTACTATTTCAGCTCTGGAGCTGCTAAGAACAGGCATGGCTTCTAGGGGTTTGAATTTTCCTTATAATAATGTTCATCATCCATTATTGATGCCCAACTCAAATGGTACCCTTTACCCATCTGGGTTTCCCATGCAAGAAGTTAAACCAAGCCTTGGCTTTTCACTTGATCATGATGGGCTTGGAGATCATAGTGGGAGGCTCTTGTTTCCTTTTGGAGATAATCACATCAAGCAGTTTTCAGGTTCTGAAGCGGAACAAAATAAGGAACAAGGAAATTCCACTGGGTATTGGCCTGGAATGATCGGTGAAGGATCATGGTAA 903 0.4507 MQATFLAFNLHSKAMLKVKMKTPLPPSLLTLMQADPAVAQVRFAGPMEGIAPNSCTKPVSEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIPPSSSSSAAAAAAATASSSKVPDLNPPTQNPKMHGGQDLNLGFPDMDQKYHHGITSYVDSSNSSSAPTTTISALELLRTGMASRGLNFPYNNVHHPLLMPNSNGTLYPSGFPMQEVKPSLGFSLDHDGLGDHSGRLLFPFGDNHIKQFSGSEAEQNKEQGNSTGYWPGMIGEGSW 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0616 300 Pfam Dof domain, zinc finger 68 124 IPR003851 GO:0003677|GO:0006355
Glsi06g0616 300 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 59 196 IPR045174 GO:0003700|GO:0006355
Glsi06g0616 300 MobiDBLite consensus disorder prediction 111 166 - -
Glsi06g0616 300 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Glsi06g0616 300 MobiDBLite consensus disorder prediction 275 300 - -
Glsi06g0616 300 MobiDBLite consensus disorder prediction 123 160 - -
Glsi06g0616 300 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0616 Glsi-ChrGlsi06 5801675 5805706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0616 59 300 C2C2-Dof Transcription Factor Family AT3G61850 47.163 8.66e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi06g0616 zf-Dof 3.1e-33 No_clan