Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0612 ATGAATTCTGTTGCTGGATTGGCATTGCAGGTAAACAATGGGATTAGGACAAGGGAACCGCCTGACTTCGACGAGGACATTGCAGAGAAAGATCCAACCGGCCGGTATATTCGGTACAATGAAATCTTAGGCAAGGGTGCTTTCAAGACTGTTTATAGAGGCTTTGATGAAGTTGATGGAATAGAGGTTGCTTGGAATCAAGTTAAGATTGATGACCTTTTGCAGTCAGTAGGAGATCTAGGGAAACTGCATTCTGAAGTTCTTATATTGAAGTCTTTAAAACATGAAAATATTATGAAGTTCTATAATTCCTGGATTGACGAGAAGAATAAAACTGTTAACATGATTACTGAGCTCTTCACATCTGGAAGTTTAAGGCAATACCGTAAGAAGCATAAAAATGTTGACACGAAGGCCATAAAAGGTTGGGCTAGGCAGATTCTTCGAGGTTTAGTCTATATTCACAGTCAAAAGCCACCTATTATCCATCGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACAATGGTGAAGTTAAGATAGGAGACCTAGGCCTGGCAATTGTCATGCAGCAACCAACTGCTCGAAGTGTCATTGGGACTCCTGAGTTTATGGCTCCAGAACTTTATGAAGAGGAATACAATGAGCTTGTTGACATCTATTCTTTTGGGATGTGCATGTTGGAGATGGTTACTTTTGAGTATCCCTATAGTGAATGCAAAAATCCAGCACAAATCTATAAGAAAGTTACCTCTGGCATCAAACCTGCTTCTCTTAGTAAGGTGAGTGACCCTCAAATTCGAGAATTTATTGAAAAATGTCTGGTTCCAGCATCTCAGAGATTGTCTGCTGAGGAGCTTCTTAAAGACCCATTTCTGCAAGTTGAGAATCCAAAGAATCCAGTCCGAGATCCCTTACAGTTACCTTGTCAAACTCCAAAGTCTATAGATTTGTCCAAGTCTGGTCCTCTATCTATGGATATAGATGCTGATTACAAACAGATTTCTGGGAGTACCTGTGCTGAAAGCAACTGTGGAAGTCCGCATAGTCCAGTTCTAGAATTCCAGAGGACATTTAAGAATAATGAGTTTAAGATGAAAGGGACAAAAAATGATGATAACTCAGTAGCATTGAACTTGCGTATTGCTGATCCATCCGGTCGAGTAAGGAATATACATTTTCTCTTTTACCTTGATACAGATACTGCAGTCTCTGTGGCCTCAGAGATGGTTGAACAATTGGAGTTAGCAGAACATGATGTCACCTTCATAGCTGAGCTGATTGATTATTTGATAGTGAAACTTCTGCCTGGGTGGAAGCCCTCATCTGATTATTCCTCAAGTGGAGGAATAAGTCTCTATGGTGGGTCTCCAACACTTGGAGATGGCCAAACCTTAATGTTGAGCCCATGGGATTCTGTCCTAAGTAGGGTTCCATCTGGATTAGTTATTGACCAAGATGTTTTATCAGGGTTAAATACTGCTCAAGAAGTTCTTGTTACAGCCAGGGAGAGCTGCTCGTGCAATGGCTCTGATATTGCTATTTTCCAAGGTGAGTATAATTCTTCTCCCAGTTTGGCTGATATGGAATTTCAACACTCACAAGGATCTGCAGTGTCTGAGATACTTGGTGAAGACGCATCCATAAGAAATGACCTTGATTTCAATATTGATGGGAGCTCTAAAGGCTTATGTGGGTCCATGTCTGAACTGGATCTTGGGGATACATACTTTGAGGCTTGCAAATTACAGAGTACAGATAGTAGTGTTGGAGAAGGCATTGTGATAAATAAATTCACAAAGAACTCAACAATCCCAGCTTTTTGTGGAACATCTAATGCTATGAGCTTGACTAGCAGCTGTTCTTCTCTATCTTTAGCAGACAAAGACATAGATCCTGAGCTAAAGTTGGAACTTGATGCAATTGAGGCACAGTATCAGCAATTTTTTCAAGAACTTACTAGAATGAAGTCGGAGGCAGTGGAAGCTACCAGAAGAAGATGGACAGCAAAGAAGAAATTGGCTGTTCATTGA 2037 0.4055 MNSVAGLALQVNNGIRTREPPDFDEDIAEKDPTGRYIRYNEILGKGAFKTVYRGFDEVDGIEVAWNQVKIDDLLQSVGDLGKLHSEVLILKSLKHENIMKFYNSWIDEKNKTVNMITELFTSGSLRQYRKKHKNVDTKAIKGWARQILRGLVYIHSQKPPIIHRDLKCDNIFVNGNNGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCMLEMVTFEYPYSECKNPAQIYKKVTSGIKPASLSKVSDPQIREFIEKCLVPASQRLSAEELLKDPFLQVENPKNPVRDPLQLPCQTPKSIDLSKSGPLSMDIDADYKQISGSTCAESNCGSPHSPVLEFQRTFKNNEFKMKGTKNDDNSVALNLRIADPSGRVRNIHFLFYLDTDTAVSVASEMVEQLELAEHDVTFIAELIDYLIVKLLPGWKPSSDYSSSGGISLYGGSPTLGDGQTLMLSPWDSVLSRVPSGLVIDQDVLSGLNTAQEVLVTARESCSCNGSDIAIFQGEYNSSPSLADMEFQHSQGSAVSEILGEDASIRNDLDFNIDGSSKGLCGSMSELDLGDTYFEACKLQSTDSSVGEGIVINKFTKNSTIPAFCGTSNAMSLTSSCSSLSLADKDIDPELKLELDAIEAQYQQFFQELTRMKSEAVEATRRRWTAKKKLAVH 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0612 678 SMART serkin_6 37 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0612 678 SUPERFAMILY Protein kinase-like (PK-like) 31 302 IPR011009 -
Glsi06g0612 678 Gene3D Transferase(Phosphotransferase) domain 1 120 299 - -
Glsi06g0612 678 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 378 433 IPR024678 GO:0004674|GO:0005524
Glsi06g0612 678 ProSiteProfiles Protein kinase domain profile. 37 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0612 678 Gene3D Phosphorylase Kinase; domain 1 22 118 - -
Glsi06g0612 678 CDD STKc_WNK 35 294 - -
Glsi06g0612 678 FunFam probable serine/threonine-protein kinase WNK9 120 299 - -
Glsi06g0612 678 Gene3D - 375 441 - -
Glsi06g0612 678 Pfam Protein kinase domain 40 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0612 678 Coils Coil 640 660 - -
Glsi06g0612 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Glsi06g0612 678 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 24 497 - -
Glsi06g0612 678 FunFam Probable serine/threonine-protein kinase WNK1 22 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0612 Glsi-ChrGlsi06 5764882 5768321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0612 614 678 MAP Kinase Kinase Kinase AT5G41990 40.000 2.27e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Glsi06g0612 Pkinase 4.3e-51 CL0016