Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0606 ATGCTCAATGTTGTAACATTAACGGCAAAATCAGGGCTTCGTTATTCTTGCGCTGCCCAGACTATAAAAATGGCTTACCAGAATAACGCCGCCTTATTCGCAAGGGATCTCTCAGCTCTGGAGCTTTTGGGGAAGGGAAGGAAATTTTCGAGCTTTGCAGGCATAGCTGTGAAGATGAGGCCGGTTTTCGTTGGGAATTTTGAGTACGATACCCGCCAATCAGAGCTTGAGCGCCTGTTCGCCAAGTATGGGAGGATTGAGCGCGTGGACATGAAATCGGGTTTTGCTTTTGTCTATTATGAGGATGAGCGAGATGCTGAAGAGGCAATTCGTGCGCTTGACAATTATCCATTTGGTTATGACAAGCGAAGGCTGTCTGTAGAGTGGGCTAGAGGTGAACGGGGCCGTCATCGTGATGGGTCAAGAGCAAACTCGAAGCCCACAAAAACGTTATTTGTGATTAACTTTGACCCAATTCGTACTAGAGTTCGTGATATAGAAAGACATTTTGAACCTTATGGGAAGGTTCTTCATGTTCGGATTCGTCGGAATTTTGCATTTGTGCAATTTGAAACACAAGAAGATGCTACTAAAGCTCTGGAGTGTACACATATGAGTAAGATTCTGGATAGGGTGGTGTCTGTGGAGTATGCTTTGAGAGATGATGATGAGAGGGGTGACAGATATTATGAGAGTCCTAGAAGAGGGGGTTATGGAAGATCACCCAGTCCACCTTATCGCAGGCGACCAAGTCCTGATTATGGTCGTCCACGCAGCCCCGTGTATGATAGGTACAGTGGACCAGCATATGACAGGCGTAAGAGCCCTGATTATGGTAGGCACAGAAGTCCTGAATATGGTCGATATCGCAGTCGTTCACCTATCCGAAGGTCAAGAACTTGA 903 0.464 MLNVVTLTAKSGLRYSCAAQTIKMAYQNNAALFARDLSALELLGKGRKFSSFAGIAVKMRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNYPFGYDKRRLSVEWARGERGRHRDGSRANSKPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYESPRRGGYGRSPSPPYRRRPSPDYGRPRSPVYDRYSGPAYDRRKSPDYGRHRSPEYGRYRSRSPIRRSRT 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0606 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 220 IPR000504 GO:0003723
Glsi06g0606 300 FunFam Serine/arginine-rich splicing factor RS31 59 142 - -
Glsi06g0606 300 Gene3D - 56 142 IPR012677 -
Glsi06g0606 300 Gene3D - 143 228 IPR012677 -
Glsi06g0606 300 MobiDBLite consensus disorder prediction 267 292 - -
Glsi06g0606 300 FunFam Serine/arginine-rich splicing factor RS31 143 231 - -
Glsi06g0606 300 MobiDBLite consensus disorder prediction 226 300 - -
Glsi06g0606 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 151 213 IPR000504 GO:0003723
Glsi06g0606 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 118 IPR000504 GO:0003723
Glsi06g0606 300 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 149 293 - -
Glsi06g0606 300 SUPERFAMILY RNA-binding domain, RBD 60 223 IPR035979 GO:0003676
Glsi06g0606 300 CDD RRM2_AtRSp31_like 150 219 - -
Glsi06g0606 300 SMART rrm1_1 150 216 IPR000504 GO:0003723
Glsi06g0606 300 SMART rrm1_1 61 128 IPR000504 GO:0003723
Glsi06g0606 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 132 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0606 Glsi-ChrGlsi06 5740449 5743681 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0606 57 225 Eukaryotic Initiation Factors Gene Family AT4G34110 27.551 5.18e-10 58.2