Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0603 ATGATGGTAGCAGATGTATTGTCTGGCGCCTCTTCTGGTCCTACTGGAGAAATTATTTCTGAGATCATAGAGACTATTTTTGAGCTTATATACACTGCTGGTGATGTCCTTGTGAAGAAGGATAGTTTTAAGGAACTTGCAGCTTACATGGAAAGAATTGTACCCATCTTAAAAGAATTGAGGGAGAGAGAAGTTAGTAATATTGAGACTTTCAACCACACCATTGAGATTTTGAATCGTGAAATCAGAGACGCAAAGAAACTGACTCTGGAATGCAGCAAGAGGAACAAGGTATATCTCCTATTGAACTGCAGGTCAGTTGTTAAGCGTTTAAAGTACAGCACAAATGAGATTAGCCGGGCTCTTGGTCTCATTCCTCTTGCTACATCAGATCTTTCTTCTGGAATAATTGAAGAAATTGAAAAGCTCTGTAACAATATGCAGAAAGCTGAGTTTAAGGCAGCCATAGCAGAAGAGGAAATTTTGGAGAAAATTGAGTCAGGGATACAGGAAAAGAATGTTGATCGCTCCTATGCCAATAATTTGCTGATTCTCATTGCAGAAGCTGTAGGCATTACAAATGAGAGGTCAACAATGAAGAAGGAACTGGAAGAATTCAAGAGTGAAATTGAAAATGCCCGTCTCAGGAAAGACCTGGCTGAAGCTATACAGATGGATCAGATCATAGCTCTGCTTGAAAGGGCTGATGCAGCCTCATCACCAAAGGAAAAGGAACTAAAGTACTTTGCCAAACGCAAATCTCTGGGAAATCAACCCCTAGAGCCTCTTCAATCATTTTATTGCCCTATCACCCGGGATGTTATGGTGGACCCTGTTGAAACTTCGTCAGGGCAGACATTTGAGAAAAGTGCCATAGAAAAGTGGTTTGCAGAAGGAAACAAAATGTGTCCTCTGACCATGACTCCTTTAGACACATCAATTTTGCGACCTAACAAAACCTTGAAACAATCTATAGAAGAATGGAAGGATAGAAATACTATGATTACAATTGCTTCAATGAAAGAAAAAATCCAGTCTGGAGATGATGAAGAAGTAATGCGTAGACTGGAAACTCTACAGGATTTGTGTGAACAAAAGGATCAGCACAAGGAATGGATGATACTGGAGAATTATATACCAGTTCTTATCCAGGTTCTTGGTTCCAAAAACCGTGATGTAAGGAATGATGCTCTTGTCATCCTTTGCATGTTGGCTAAGGATAGTGATGATGCGAAGGAAAGAGTTGCAAATGTCGATAATGCTATTGAATCTATTGTCCATTCTCTTGGGCGTCGTCCCGGGGAAAGGAAATTGGCAGTGGCATTACTTTTGGAATTATCCAAATATAGTTTGTTACGGGAATATATTGGAAAGGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGCAGTGATGACAATCAAGCAGCCAGAGATGCTACAGAACTACTGGAGAATCTTTCTTACACTGATCAGAATGTTCTGCAGATGACAAGGGCAAATTATTTCAAGCATTTGTTGCAGCGCCTCTCCACAGGACCAGATGATGTAAAAATTGTCATGGCTACAACTCTAGCAGAAATGGAGTTAACTGACCACAATAAAGAGTCCTTGTTTGAAGGTGGTGTGCTGGATCCTCTTCTTCACATGGTCTCATATAGTGATCTTCAGGTGAAAACAGTGGCTATTAGAGCCCTTCGGAACCTATCCAGTTTAAAGAAAAATGGACTGGAAATGATTCGACGAGGTGCAGTTCGCCTATTACTTAACGTTCTTTTCCAACACAGCTTACCACCCTCAAGTTTGCGGGAACATGTAGCTGCCATAATCATGCAACTTGCTGAATCAACCATTGCTCAAGACACCCAAACACCAGTTTCATTATCAGAATCTGATGAAGACGTTTTTAAGCTCTTCTCTTTAATTAGATTCACAGTGCCTGATGTGCAGCAAAACATTGTCCAGACCTTTTATGCCTTGTGTCAGTCCCCATCTGCTTCATATATCAAGACCAAGTTAATAGAGTGCTCGGCTGTTCAAGTTTTGGTTCAGTTGTGTGAGAACGAAAACTTAAACCTTCGAGCAAGTTCTGTAAAGCTATTGTCGTGCTTGGTAGAAAGTTGTGATGAAGCTAGCATCCTGGAGAACGTAAATCAGAAGAGCATTGAGAATTTACTACGGATCCTTAGATCTTCTTCTGATGAAGAAGAAATTGCTTCTGCCATGGGCATAATATGCTATCTTCCAGAAGTTCACCAGCTCACTCAATGGCTTCTTGATGATGGTGTACTGCCAATCATTTTTAAGTATATCCAAGAAGGGAAGGACAAAGATCTCCAAAAGAACAAGTTAGTGGAGAATTCTGTTGGTGCCCTATGTCGTTTCACAGTTCCAACGAACTTGGAATGGCAAAAAAGTGCAGCAGAAACTGGGATTATAACTGTTTTAGTACAGTTGCTCGAATGTGGAACCACAGTGGCAAAACAACGTGCAGCGTTGTGTCTTACTCAATTTTCAAAGAGTTCACTTGGGCTGAGCAGGCCAATACCCAAGCGCAAGGGACTTTGGTGCTTCTCAGCTCAGGCAGAAATTGGCTGCTTGGTTCATGGAGGAATCTGCACTGTCAAGTCATCATTTTGCCTTGTGGAGGCTGATGCAGTGGGACCACTAACAAGGACTCTTGGGGAATCCGATCCTGGAGCATGTGAGGCTTCTTTAGATGCACTTTTGACTTTAATTGAAGGTGAAAGACTACAGAGTGGTAGTAAAGTGCTTGAGGCAGCAAACGCCATACCAGCAATGATAAGATTTCTTGGTTCCCCTTCGCCTGGATTGCAGGAGAAGTCTCTTCAAGCTTTGGAAAGGATTTTTCGCTTAATGGAGTTCAAACAGAAGTATGGAGCCTCAGCTCAAATGCCTCTAGTTGACTTGACTCAACGTGGTAATGGCAGTATGAGATCAATGGCAGCTAGAATATTGGCACATTTAAACGTGCTTCATGATCAGTCTTCCTATTTCTGA 3024 0.415 MMVADVLSGASSGPTGEIISEIIETIFELIYTAGDVLVKKDSFKELAAYMERIVPILKELREREVSNIETFNHTIEILNREIRDAKKLTLECSKRNKVYLLLNCRSVVKRLKYSTNEISRALGLIPLATSDLSSGIIEEIEKLCNNMQKAEFKAAIAEEEILEKIESGIQEKNVDRSYANNLLILIAEAVGITNERSTMKKELEEFKSEIENARLRKDLAEAIQMDQIIALLERADAASSPKEKELKYFAKRKSLGNQPLEPLQSFYCPITRDVMVDPVETSSGQTFEKSAIEKWFAEGNKMCPLTMTPLDTSILRPNKTLKQSIEEWKDRNTMITIASMKEKIQSGDDEEVMRRLETLQDLCEQKDQHKEWMILENYIPVLIQVLGSKNRDVRNDALVILCMLAKDSDDAKERVANVDNAIESIVHSLGRRPGERKLAVALLLELSKYSLLREYIGKVQGCILLLVTMSSSDDNQAARDATELLENLSYTDQNVLQMTRANYFKHLLQRLSTGPDDVKIVMATTLAEMELTDHNKESLFEGGVLDPLLHMVSYSDLQVKTVAIRALRNLSSLKKNGLEMIRRGAVRLLLNVLFQHSLPPSSLREHVAAIIMQLAESTIAQDTQTPVSLSESDEDVFKLFSLIRFTVPDVQQNIVQTFYALCQSPSASYIKTKLIECSAVQVLVQLCENENLNLRASSVKLLSCLVESCDEASILENVNQKSIENLLRILRSSSDEEEIASAMGIICYLPEVHQLTQWLLDDGVLPIIFKYIQEGKDKDLQKNKLVENSVGALCRFTVPTNLEWQKSAAETGIITVLVQLLECGTTVAKQRAALCLTQFSKSSLGLSRPIPKRKGLWCFSAQAEIGCLVHGGICTVKSSFCLVEADAVGPLTRTLGESDPGACEASLDALLTLIEGERLQSGSKVLEAANAIPAMIRFLGSPSPGLQEKSLQALERIFRLMEFKQKYGASAQMPLVDLTQRGNGSMRSMAARILAHLNVLHDQSSYF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0603 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 340 IPR013083 -
Glsi06g0603 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 1007 - -
Glsi06g0603 1007 SUPERFAMILY RING/U-box 257 334 - -
Glsi06g0603 1007 ProSiteProfiles RPW8 domain profile. 1 159 IPR008808 -
Glsi06g0603 1007 Gene3D - 635 851 IPR011989 -
Glsi06g0603 1007 Coils Coil 68 88 - -
Glsi06g0603 1007 Coils Coil 140 160 - -
Glsi06g0603 1007 CDD RING-Ubox_PUB 266 315 IPR045210 -
Glsi06g0603 1007 Pfam Armadillo/beta-catenin-like repeat 533 572 IPR000225 GO:0005515
Glsi06g0603 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Glsi06g0603 1007 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Glsi06g0603 1007 SMART arm_5 449 490 IPR000225 GO:0005515
Glsi06g0603 1007 SMART arm_5 408 448 IPR000225 GO:0005515
Glsi06g0603 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Glsi06g0603 1007 SMART arm_5 532 572 IPR000225 GO:0005515
Glsi06g0603 1007 SMART arm_5 801 841 IPR000225 GO:0005515
Glsi06g0603 1007 SMART arm_5 366 406 IPR000225 GO:0005515
Glsi06g0603 1007 SMART arm_5 667 707 IPR000225 GO:0005515
Glsi06g0603 1007 Gene3D - 16 129 IPR036537 GO:0007166
Glsi06g0603 1007 Gene3D - 865 1005 IPR011989 -
Glsi06g0603 1007 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Glsi06g0603 1007 Coils Coil 196 223 - -
Glsi06g0603 1007 Gene3D - 341 634 IPR011989 -
Glsi06g0603 1007 SUPERFAMILY ARM repeat 336 997 IPR016024 -
Glsi06g0603 1007 Pfam U-box domain 266 332 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0603 Glsi-ChrGlsi06 5709356 5715868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0603 264 1007 U-box Gene Family AT1G76390 28.680 8.85e-60 218