Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0591 ATGTTAGATCATAGGGAATATTCCCATTCTGCAGAAGCTGCAGAAACAAACAGCAGCACAACTTCATCGAGAAAGAAGAGGAGCAAGAACAAGAAAAGGTTCAGTGATGAACAGATCAAATCATTGGAATCCATTTTTGAGACAGACACAAAGCTTGAACCCAGAAAGAAGTTGCAGCTGGCTAGAGAGCTTGGGTTGCAACCACGACAGGTTGCCATTTGGTTCCAGAACAAGCGAGCTCGATGGAAGTCAAAGCAGCTCGAACGAGACTTTAGCATTCTCCGCGCCAATTATACCAGCTTGGCTTCCAGATTTGAAGCTCTCAAGAAGGAGAAGCAGGCATTAATAGTCCAGTTGCAGAAACTGAACGATCAAAAGCAATTGCCAAAAGAGCAAGTTAAAGTTGCAAATAGCATGGATAGTGAGTCAGATAATGGAGACATCATCAAACATGAAGCAGAGGTGAAGCCAAGCCCGTCAATGGAAAGATCAGAACATGTGCTTAGTGTTCTCTCAGATGATGACAGCAGCATAAAAGCAGAATACTTTGGGCTTGAAAATGAACTTAGCCTTCTGGGTTTTGTTGACCATGGTGATGGTTCCTTGACATCACCAGAAGATTGGGGCACCCTTGATTCTGATGACCTCTTAGACCAATCTGGTAACGGCAACCAGTGGTGGGACTTCTGGTCCTAA 696 0.4425 MLDHREYSHSAEAAETNSSTTSSRKKRSKNKKRFSDEQIKSLESIFETDTKLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDFSILRANYTSLASRFEALKKEKQALIVQLQKLNDQKQLPKEQVKVANSMDSESDNGDIIKHEAEVKPSPSMERSEHVLSVLSDDDSSIKAEYFGLENELSLLGFVDHGDGSLTSPEDWGTLDSDDLLDQSGNGNQWWDFWS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0591 231 Gene3D - 19 92 - -
Glsi06g0591 231 Coils Coil 105 125 - -
Glsi06g0591 231 CDD homeodomain 34 86 IPR001356 GO:0003677
Glsi06g0591 231 Pfam Homeodomain 29 83 IPR001356 GO:0003677
Glsi06g0591 231 PRINTS Lambda-repressor HTH signature 56 65 IPR000047 GO:0003677
Glsi06g0591 231 PRINTS Lambda-repressor HTH signature 65 81 IPR000047 GO:0003677
Glsi06g0591 231 Pfam Homeobox associated leucine zipper 85 126 IPR003106 GO:0006355|GO:0043565
Glsi06g0591 231 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677
Glsi06g0591 231 FunFam Homeobox-leucine zipper protein ATHB-7 13 85 - -
Glsi06g0591 231 SUPERFAMILY Homeodomain-like 8 87 IPR009057 -
Glsi06g0591 231 SMART HOX_1 27 89 IPR001356 GO:0003677
Glsi06g0591 231 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981|GO:0006355
Glsi06g0591 231 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 22 163 IPR045224 GO:0003700
Glsi06g0591 231 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0591 Glsi-ChrGlsi06 5599060 5600206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0591 1 231 Homeobox Transcription Factor Family AT2G46680 47.656 7.37e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi06g0591 Homeodomain 4e-17 CL0123