Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0590 ATGGGAAAAAGTGGGGAGAAAGGTTTGAAGGAAGTACCAAAAGGGTGTTTGGCGATCAAAGTGGGTGAAGGTGAAGAGCAAGAGAGAATTGTGGTGCCTGTGATTTACCTGAACCACCCACTGTTTGCTCAGCTATTAAAGGAGGCCGAGCAAGAGTATGGTTTTGCTCAGAGGGGAACCATAATCATCCCTTGTCAACTGGAGCACTTTAGGTACGTTCAAGCCATGATTCATAGGGAAACGTCCCTCCAACACCGCCACCACAACCATCTTGCTCGTTGCTTTAGGGTAGCTCCAGAACTTTGGATGAATTCAATTGAATCTAACAAAAGAAGCTTTGGGGTTTCGCTTTCGATGGTGAAAAGTGAGGCAGAAAGTTTGAAGGATGTACCAGAAGGGTGTTTGGCGATCAAAGTGGGTGAAGGTAAAGAGCAAGAGAGAATTGTGGTACCTGTAATTTACCTAAACCACCCATTGTTTGCTCAGCTATTAAAGCATGCGAAGGAAGAGTATGGATTTGCTCAGAAGGGAACCATAGTCATTCCTTGTCAACTGGTGGAGTTTAGGTCACGTAAAATTTCATATGTTTCAGCCATATTTTCTTCTTATGTTGGTGCTGATGATCGTAAATATAAGCAAGCTAGGGTGATGGTAGAAGAACCTAACAATAGAAATTTTGGGTTTTGGCTTCCGATGGGAAAAAGTGGGGAGAAAGGTTTGAAGGAAGTACCAAAAGGGTGTTTGGCGATCAAAGTGGGTGAAGGTGAAGATCAAGAGAGAATTGTGGTGCCTGTGATTTACCTGAACCACCCACTGTTTGCTCAGCTATTAAAGGAGGCCGAGCAAGAGTATGGTTTTGCTCAGAGGGGAACCATAATCATCCCTTGTCAACTGGAGCACTTTAGGTACGTTCAAGCCATGATTCATAGGGAAACGTCCCTCCAACACCGCCACCACAACCATCTTGCTCGTTGCTTTAGGGTAGCTCCAGAACTTTGGATGAATTCAATTGATGACACAGGCATGTTCTATGGCTTAAAATACTACAATGATTTGTTGATGGAAGCTGGGCCTCAAGGGAATGTTCAGTCTGAGGTGCTTATGAAGAAGGACGAGAACACTTTTACTCTCAAGCAGGGATGGGCATTTCCCAGGAAGATCTACTTCAACGACGCAGCTCCTATGCATTCTGGCGATGGTTTTGCCTTCAGCTTTGAGAATCTGGAGTCCATGAGAATTGGAGAATATTCCAAAACAGTCGAACCTCCACTTTACCTCTACACAGGCATGATTCTCTAA 1299 0.4442 MGKSGEKGLKEVPKGCLAIKVGEGEEQERIVVPVIYLNHPLFAQLLKEAEQEYGFAQRGTIIIPCQLEHFRYVQAMIHRETSLQHRHHNHLARCFRVAPELWMNSIESNKRSFGVSLSMVKSEAESLKDVPEGCLAIKVGEGKEQERIVVPVIYLNHPLFAQLLKHAKEEYGFAQKGTIVIPCQLVEFRSRKISYVSAIFSSYVGADDRKYKQARVMVEEPNNRNFGFWLPMGKSGEKGLKEVPKGCLAIKVGEGEDQERIVVPVIYLNHPLFAQLLKEAEQEYGFAQRGTIIIPCQLEHFRYVQAMIHRETSLQHRHHNHLARCFRVAPELWMNSIDDTGMFYGLKYYNDLLMEAGPQGNVQSEVLMKKDENTFTLKQGWAFPRKIYFNDAAPMHSGDGFAFSFENLESMRIGEYSKTVEPPLYLYTGMIL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0590 432 Pfam Auxin responsive protein 10 77 IPR003676 GO:0009733
Glsi06g0590 432 Pfam Auxin responsive protein 241 308 IPR003676 GO:0009733
Glsi06g0590 432 Pfam Auxin responsive protein 117 189 IPR003676 GO:0009733
Glsi06g0590 432 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 236 303 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0590 Glsi-ChrGlsi06 5572125 5583469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0590 298 403 COBRA Gene Family AT3G02210 42.202 2.70e-21 94.0