Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0587 ATGACTCCAAACTTCCTCCGCTCTTATATTCCCTCAAATCTACTTTCATTATCCCGTACATTATCCACCCCAGATCCTACCCTACTCAAATCTCTCATCTCTCCCCACGTGTCAAATCAGTGTATTTCCGTCCTTCAATATTGCCCCAGTGACCCAAATCATAAGCTATGTTTTGGTCCTCAGGATTTTCCATTTCTGTACCGCGAAGCTGCTTATAATTCCCTCTCTCAGCCTTTTGGGTCACACTCATCTCTCAATTTGGCTCATATTTCCGCGCCGGAGCAAGCTGTACTGATGGGCCAGTGCTACGGCAAAACCAATCCCACCACTGAAAATGACGCTGCCCCAAATACAACCACTATTATTGCCGGTTCCGGTGGGCCGCCTCAGTCGCCGCTGCCGGAAGGCAGCGGTGGCAACGGGTTTCCGTCGGTGAAGAACACGCCAGCTCGGTCATCCAACTCGAGCCCCTGGCCGAGCCCGTACCCACATGGCGGCGTCAACGCGAGCCCGTTTCCAGGTGGGGTGTCGCCGTCGCCGGCGAGGTCATCAACTCCGAGGAGGTTTTTTCGGCGACCGTTCCCGCCTCCGTCGCCGGCGAAGCATATCAGAGCGTCGTTGGCTAAGCGGCTTGGGCATGCGAAGCCAAAGGACGGGCCGATCCCCGAGGACCGTGGAACGGAGCCGGAGCAGGCGCTGGACAAGAGCTTCGGGTATAGTAAGAATTTTGGAGCTAAGTACGAGTTAGGTAAGGAAGTGGGGAGAGGGCATTTTGGTCATACTTGCTCTGCAAGGGGCAAGAAGGGCGAGCTCAAAGACCAGCCTTTAGCAGTGAAAATCATTTCGAAGGCGAAGATGACAACGGCAATAGCTATTGAAGATGTTCGTAGAGAAGTGAAGATATTAAAAGCACTATCTGGCCATAAACATCTCGTCAAATTTCATGATGCTTGTGAGGATGCCAATAATGTGTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACAGAATTTTGTCAAGGGGAGGAAGGTATACAGAGGAAGATGCAAAAGTTATAGTTTTGCAGATTCTAAGTGTTGTTGCTTTTTGTCATCTGCAAGGCGTTGTGCACCGAGACTTGAAACCTGAGAATTTTCTTTTCACTTCAAGAAATGAAGATGCTGATATGAAACTTATTGATTTTGGTCTATCTGACTTCATCAAGCCAGATGAAAGACTGAATGACATAGTTGGAAGTGCATACTATGTAGCGCCTGAGGTCCTTCACAGATCATATAGTCTGGAAGGAGATATATGGAGTATTGGTGTTATCACCTATATCTTGTTATGTGGAAGTCGACCTTTCTGGGCTCGGACAGAATCTGGAATTTTCCGTGCAGTGCTCAGAGCTGATCCTAATTTTGATGATTTACCTTGGCCTTCTGTGTCTGCCGAGGCCAAGGACTTTGTAAAAAGGCTGTTAAACAAGGACTACAGGAAAAGAATGACTGCTGTCCAGGCTCTAACTCACCCTTGGTTGAGAGATGACAGCCGTTCTATACCTTTAGATATATTAATTTATAAATTAGTGAAGTCTTATCTTCATGCGACGCCATTCAAACGGGCAGCTCTAAAGGCCCTATCAAAAGCCTTGACAGAGGATGAGTTGGTGTATCTCAGAGCACAGTTCAGATTGTTGGAACCGAACAAAGATGGCTATGTCTCCCTTGACAATTTCAAAATGGCTCTTGTACGAAACTCAACCGATGCCATGAGGGAGTCAAGGGTTCTTGATATTATACATACGATGGAACCACTTGCCTATAGGAAGATGGACTTTGGAGAATTTTGTGCAGCTGCAATTAGCACATACCAATTAGAGGCACTTGATAGGTGGGAGCACATTGCCTCCACTGCTTTTGAGCATTTTGAGAGAGAGGGCAACCGGGTGATATCGGTTGAAGAATTAGCCAGAGAGTTGAATCTCATTCCGTCCGCTTATTCGATTCTCAGAGATTGGATAAGACATACTGATGGAAAGCTTAGTTTACTTGGATATACAAAATTTTTGCATGGTGTGACACTGCGTAGCTCAAACACAAGACCCCATTAG 2100 0.469 MTPNFLRSYIPSNLLSLSRTLSTPDPTLLKSLISPHVSNQCISVLQYCPSDPNHKLCFGPQDFPFLYREAAYNSLSQPFGSHSSLNLAHISAPEQAVLMGQCYGKTNPTTENDAAPNTTTIIAGSGGPPQSPLPEGSGGNGFPSVKNTPARSSNSSPWPSPYPHGGVNASPFPGGVSPSPARSSTPRRFFRRPFPPPSPAKHIRASLAKRLGHAKPKDGPIPEDRGTEPEQALDKSFGYSKNFGAKYELGKEVGRGHFGHTCSARGKKGELKDQPLAVKIISKAKMTTAIAIEDVRREVKILKALSGHKHLVKFHDACEDANNVYIVMELCEGGELLDRILSRGGRYTEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRNEDADMKLIDFGLSDFIKPDERLNDIVGSAYYVAPEVLHRSYSLEGDIWSIGVITYILLCGSRPFWARTESGIFRAVLRADPNFDDLPWPSVSAEAKDFVKRLLNKDYRKRMTAVQALTHPWLRDDSRSIPLDILIYKLVKSYLHATPFKRAALKALSKALTEDELVYLRAQFRLLEPNKDGYVSLDNFKMALVRNSTDAMRESRVLDIIHTMEPLAYRKMDFGEFCAAAISTYQLEALDRWEHIASTAFEHFEREGNRVISVEELARELNLIPSAYSILRDWIRHTDGKLSLLGYTKFLHGVTLRSSNTRPH 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0587 699 MobiDBLite consensus disorder prediction 108 126 - -
Glsi06g0587 699 Gene3D - 527 688 - -
Glsi06g0587 699 SUPERFAMILY EF-hand 535 687 IPR011992 -
Glsi06g0587 699 ProSiteProfiles EF-hand calcium-binding domain profile. 550 585 IPR002048 GO:0005509
Glsi06g0587 699 MobiDBLite consensus disorder prediction 211 231 - -
Glsi06g0587 699 Pfam Protein kinase domain 247 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0587 699 MobiDBLite consensus disorder prediction 141 161 - -
Glsi06g0587 699 Gene3D Transferase(Phosphotransferase) domain 1 336 520 - -
Glsi06g0587 699 FunFam CDPK-related kinase 1 240 335 - -
Glsi06g0587 699 ProSitePatterns Protein kinases ATP-binding region signature. 253 279 IPR017441 GO:0005524
Glsi06g0587 699 CDD STKc_CAMK 246 508 - -
Glsi06g0587 699 SMART serkin_6 247 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0587 699 SUPERFAMILY Protein kinase-like (PK-like) 246 530 IPR011009 -
Glsi06g0587 699 FunFam CDPK-related kinase 3 239 411 - -
Glsi06g0587 699 FunFam CDPK-related kinase 1 545 617 - -
Glsi06g0587 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 371 383 IPR008271 GO:0004672|GO:0006468
Glsi06g0587 699 PANTHER SERINE/THREONINE-PROTEIN KINASE 231 674 - -
Glsi06g0587 699 Gene3D Phosphorylase Kinase; domain 1 240 335 - -
Glsi06g0587 699 FunFam Calcium-dependent protein kinase SK5 419 516 - -
Glsi06g0587 699 ProSiteProfiles Protein kinase domain profile. 247 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0587 699 MobiDBLite consensus disorder prediction 108 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0587 Glsi-ChrGlsi06 5546725 5554127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0587 99 693 EF-hand Containing Proteins AT3G50530 58.100 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi06g0587 Pkinase 6.6e-68 CL0016