Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0585 ATGGAGGATTTGATTATCTCTCCTTCTTCATCTTCTTCTCTGGTCTCTCTGCCCCAAGACACCCAACCAACCCCTCAGCAGAAGCTTCAATTTTTACTCCATAGTCAACCAGACTGGTGGGTCTATGCCATTTTCTGGCAGATATCAAACGACGACGTTCATGGCGACCTCTTCTTGTCCTGGGGAGAGGGCCATTTCCAAGGCACCAAAGACGCATCCCCTAGATTTACCAACACCCATCATAATTACCCCATTTCAGCAGAGCTTCACTCTCAGAGGAGGAGGTTCATGAACGGCATCCAATCCCTGTCAAACGACAACCCCAACACCGGCATCGACAACATTTGCACAAACGACGGTGATCTCCATGAAACTGAGTGGTTCTATGTCATGTCGTTGACTCGCACTTTCTCTGTCGGGTTGGATGGTTCTTCTTCTCTCCCTGGAAAGGCCTTCGCTTCTGGTTCTCTGCTTTGGCTAAACAGTGAGCATGAGCTTCAATTTTACAACTGCGAAAGAGCCAAAGAAGCTTACAAGCATGGGATTGAAACTCTGATCTGCATCCCAACCAATCTTGGAGTTCTCGAAATGGGTTCCTCTGATCTCATCGGAGAAAACTGGGGTCTAGTCCAACAAGCCAAATCTCTATTCGGGTCGGATCTCATCAAGCAACCTAACCCAGTACAATTCTTCGACGACCAGAACATCTCCTTCGCCGACATCGGCATTATCGCCGGCGTACAAGAAGACGACAATCCCCAAATGCACGATGACAATACGAGGAAGAAGAAGGAAATAGAACAGAGGAAAACAGGGCTCAAATTCGGATCGTCAAGACAATCTTCATTTGTTGATTCCGAACATTCTGATTCTGATTGTCCCATAATGGTAGAGAAAAGAACACCCAAGAAGAGAGGAAGAAAACCGGGACTTGGCCGCGAAACACCTTTGAACCACGTTGAGGCAGAGCGACAGCGGCGGGAGAAGCTGAACCGCCGATTCTACGCATTACGAGCGGTGGTGCCGAACGTTTCCAGAATGGACAAAGCTTCTCTGTTATCAGATGCTGTGGATTACATCAACGAGCTGAAAGCGAAGATCGATGAACTGGAGACACAGCTTCAGAGGGAACAGTCTAGCAGCAAGAAGATGAAATTGGAAATGGCAGATGCGATGGACAACCAGAGCACAACAACATCTACGGTGGTGGACCAAACGGGGCCTAATGGGGGCGGGTCATCAGCTGGGTCTGGGTTTGAGGTTGAGGTTAAGATCATAGGAGAAGAGGCTATGGTGAGGGTTCAATCGGATAACGCGAACCACCCAGGAGCGAGATTGATGGGTGCATTGCGAGACTTGGAGTTTCAGGTGCACCATGCGAGCATGTCCTGTGTTAATGAGCTCATGCTTCAAGACGTTGTGGTTAAGATTCCCGAGGAGTTGAGAAGCGAAGAGAGTCTTAAATCTGCAATTCTTGGGAGATTGGGGTCAGAAGCAAGATTATTAGCCGGATGA 1515 0.4851 MEDLIISPSSSSSLVSLPQDTQPTPQQKLQFLLHSQPDWWVYAIFWQISNDDVHGDLFLSWGEGHFQGTKDASPRFTNTHHNYPISAELHSQRRRFMNGIQSLSNDNPNTGIDNICTNDGDLHETEWFYVMSLTRTFSVGLDGSSSLPGKAFASGSLLWLNSEHELQFYNCERAKEAYKHGIETLICIPTNLGVLEMGSSDLIGENWGLVQQAKSLFGSDLIKQPNPVQFFDDQNISFADIGIIAGVQEDDNPQMHDDNTRKKKEIEQRKTGLKFGSSRQSSFVDSEHSDSDCPIMVEKRTPKKRGRKPGLGRETPLNHVEAERQRREKLNRRFYALRAVVPNVSRMDKASLLSDAVDYINELKAKIDELETQLQREQSSSKKMKLEMADAMDNQSTTTSTVVDQTGPNGGGSSAGSGFEVEVKIIGEEAMVRVQSDNANHPGARLMGALRDLEFQVHHASMSCVNELMLQDVVVKIPEELRSEESLKSAILGRLGSEARLLAG 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0585 504 PANTHER MYC 19 494 IPR045084 GO:0003700|GO:0006355
Glsi06g0585 504 MobiDBLite consensus disorder prediction 393 413 - -
Glsi06g0585 504 Pfam Helix-loop-helix DNA-binding domain 318 363 IPR011598 GO:0046983
Glsi06g0585 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 377 IPR036638 GO:0046983
Glsi06g0585 504 MobiDBLite consensus disorder prediction 393 417 - -
Glsi06g0585 504 Coils Coil 353 387 - -
Glsi06g0585 504 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 26 217 IPR025610 -
Glsi06g0585 504 MobiDBLite consensus disorder prediction 1 21 - -
Glsi06g0585 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
Glsi06g0585 504 Gene3D - 312 393 IPR036638 GO:0046983
Glsi06g0585 504 SMART finulus 320 369 IPR011598 GO:0046983
Glsi06g0585 504 MobiDBLite consensus disorder prediction 249 293 - -
Glsi06g0585 504 MobiDBLite consensus disorder prediction 251 272 - -
Glsi06g0585 504 MobiDBLite consensus disorder prediction 273 288 - -
Glsi06g0585 504 CDD bHLH_AtAIB_like 312 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0585 Glsi-ChrGlsi06 5503587 5505101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0585 26 496 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 34.133 2.68e-89 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi06g0585 bHLH-MYC_N 1.4e-47 CL0161