Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0579 ATGTCAGAAGGTACAGAAATTGATGAGAGGGTGGACTTTGATGAGGAAAATTACACGGAGGAGATTGATGATGATGTTGAAGAACAAATGGATAATGAATGTGTAGATGGAGGTGGTGATGAGAATGTTGAACTGAATGGTGCAGAACATGAAGATGAAGACTGGTCAGCAGAGGCTAGCAGGAAAGACAAAGTGACTGAAGCAGATAGAACTGACAATGTGATTGAATCTATAGAGGCCGACCAAAAACTATCTTCCTTAAATGAAGATGAGAAAGAGAAACATGATGAACTTCTTACCCTTCCTCCTCATGGTACTGAAGTCTTTATCGGTGGACTTCCTCGGGATGCATGTGAAGATCATTTGAGGGAGTTGTGTGAAGCGATTGGTGATATTCTTGAGGTGAGGTTAATGAAAGATAGGGACACTGGAGAAGGAAAAGGTTATGCTTTTGTGGCATTTACAACAAAAGAGTTTGCACAGAAGGCCATTGAAGAGTTACATGACAAGGAATTCAAGGGTAAAGCTTTAAGGTGTTCACTGTCCGAAACAAAACACAGATTGTTCATTGGTAATGTTCCAAAAAACTGGACAGAGGACGAGTTTAGAAAAATCATAGAGGGTGCTGGTCCTGGAGTTGAAAACATTGAGCTCATAAAGGACCCTCAAAATCCAAGCAGGAATCGTGGGTTTGCTTTTGTTCTATATTATAATAATGCCTGTGCTGACTATTCACGGCAAAAAATGTCAAGTGCAAATTTTAAGCTTGATGGTAATACCCCAACTGTCACATGGGCAGATCCCAAAAACTCATCTGATCATTCTACTTCCTCACAGGTTAAAGCTCTTTATGTGAAAAACATACCTGAGAATGCTACTACTGAACAACTGAAGGAACTATTCCATCGGCATGGGGAAGTAACAAAAGTGGTTATGCCACCTGGCAAAGATGGAGGGAAACGTGATTTTGGTTTCATTCACTATGCTGAGAGGTCCAGTGCATTAAAGGCTGTAAAAGATACAGAAAAATATGAAATAGAAGGCCAAGTGTTGGAAGTTGCTCTTGCAAAGCCTCAATCTGATAAAAAATCTGATGGAGGTTATGCCTACAATCCGGGGCTTCTTCCAAACCATTTTCCACATCCTGGATATGGTTTTTCAGGAAACCTATTTGGCTCTTTAGGGGCTGGATATGGTGCTGCTGCTGGTTATCAACAGCCAGTGATATATGGTAGAGGTCCAATGCCGGTGGGGATGCAGATGGTCCCAATGGTATTGCCAGATGGTAGAATTGGCTATGTTCTTCAACAGCCTGGTGTACAGATGCCAGCTCCCCGCCCCCACAGGAATGATCGGAGCAATGGTTCAAGTGGTCAGCTAGGGCGAGGAGGCAGTGGCAATGATGAGGGCAATCGTAGAAGGTATCGACCCTATTAG 1437 0.4273 MSEGTEIDERVDFDEENYTEEIDDDVEEQMDNECVDGGGDENVELNGAEHEDEDWSAEASRKDKVTEADRTDNVIESIEADQKLSSLNEDEKEKHDELLTLPPHGTEVFIGGLPRDACEDHLRELCEAIGDILEVRLMKDRDTGEGKGYAFVAFTTKEFAQKAIEELHDKEFKGKALRCSLSETKHRLFIGNVPKNWTEDEFRKIIEGAGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSANFKLDGNTPTVTWADPKNSSDHSTSSQVKALYVKNIPENATTEQLKELFHRHGEVTKVVMPPGKDGGKRDFGFIHYAERSSALKAVKDTEKYEIEGQVLEVALAKPQSDKKSDGGYAYNPGLLPNHFPHPGYGFSGNLFGSLGAGYGAAAGYQQPVIYGRGPMPVGMQMVPMVLPDGRIGYVLQQPGVQMPAPRPHRNDRSNGSSGQLGRGGSGNDEGNRRRYRPY 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0579 478 Gene3D - 268 373 IPR012677 -
Glsi06g0579 478 SUPERFAMILY RNA-binding domain, RBD 102 269 IPR035979 GO:0003676
Glsi06g0579 478 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 187 267 - -
Glsi06g0579 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Glsi06g0579 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Glsi06g0579 478 SMART rrm2_1 107 180 IPR003954 GO:0003676
Glsi06g0579 478 MobiDBLite consensus disorder prediction 8 38 - -
Glsi06g0579 478 MobiDBLite consensus disorder prediction 1 71 - -
Glsi06g0579 478 SMART rrm1_1 107 180 IPR000504 GO:0003723
Glsi06g0579 478 SMART rrm1_1 187 264 IPR000504 GO:0003723
Glsi06g0579 478 SMART rrm1_1 282 354 IPR000504 GO:0003723
Glsi06g0579 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
Glsi06g0579 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Glsi06g0579 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Glsi06g0579 478 Gene3D - 19 186 IPR012677 -
Glsi06g0579 478 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 9 444 - -
Glsi06g0579 478 Gene3D - 187 267 IPR012677 -
Glsi06g0579 478 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 186 - -
Glsi06g0579 478 MobiDBLite consensus disorder prediction 439 478 - -
Glsi06g0579 478 SUPERFAMILY RNA-binding domain, RBD 276 375 IPR035979 GO:0003676
Glsi06g0579 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Glsi06g0579 478 MobiDBLite consensus disorder prediction 450 464 - -
Glsi06g0579 478 MobiDBLite consensus disorder prediction 43 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0579 Glsi-ChrGlsi06 5419626 5429038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0579 108 450 Eukaryotic Initiation Factors Gene Family AT2G23350 24.802 8.24e-19 87.8