Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0574 ATGAGTATCTCTGTGAATGGACAATCTCAAGTCCCACCTGGCTTCCGGTTCCATCCAACTGAAGAGGAGCTTTTGCAGTACTACTTGAAGAAGAAGGTCCGCTATGAGAAAATTGACCTCGATGTTATTCGAGATGTTGATCTCAACAAGCTCGAGCCTTGGGACATACAAGAGAAGTGCAAGATAGGAACCACCCCTCAAAACGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACCGGAACTCGCACCAATCGCGCCACCGCTGCTGGGTTCTGGAAGGCCACTGGCCGCGACAAGGTCATCTACGGCAACGGAAAGAGAATCGGAATGAGAAAGACTCTGGTTTTCTACAAAGGCCGAGCCCCTCATGGCCAAAAATCTGATTGGATCATGCACGAATATAGACTAGAAGATAGTATCAACGACACCACCATTGTGTCCAATATGATGGAAGATGGAGGCCAGGAAGAAGGGTGGGTGGTGTGCAGGATTTTTAAGAAGAAAAACCATCTGAAAACCCTAGAGAGCCCCTTGGCGTCGTCCATTACAGGGGAAACTAGAAGGGGCCACCACATGTTCGATTCTTGTGATGACGAGGGAGCTTTGGAGCAAATACTTGAGCAAATGGGAAGAAACCATAGCTTCTGCAAGGAAGAAGACGATGCCGACAACAACAACAACGATAACAATGGCAGCTTCCATGAGAGGTTCTTGAAGCTTCCTCGGCTAGAGAGTCCAAAATCCACAAGCTTAGTCGAGAGCCAGCAGAACAATAATGGGTACCATCCCATTATGCCAGAGATGGTGGGGGAGCAGGTGAATTTGGTTAATCCATTAATGGAGGCATCATCATCTTCTGGTGGCCTCACCAACTGGGCAGCTCTAGATCGGCTTGTAGCTTCACAGCTAAATGGGCAAACTGAGGTTTCTAGGCACCTAGACTGCTTCAATATAGTCGACTCCACCATGGGCTTTTGCTCTAGTGACCATGGTCTGCAGCAACTTCCAACCCTACGATCTTCATCAACATCATCGGCAGCACACAACAGGGCTAATAATTACATTAGTGCCACTCAGGATTACACCTTCAGCAGCGAGATTGACCTCTGGAACTTTGCCCGATCAACATCATCGTTATTGTCATCCTCGGAATCACTTTGCCACGTGTCGAACACGTCACTGTAA 1194 0.4799 MSISVNGQSQVPPGFRFHPTEEELLQYYLKKKVRYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYGNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLEDSINDTTIVSNMMEDGGQEEGWVVCRIFKKKNHLKTLESPLASSITGETRRGHHMFDSCDDEGALEQILEQMGRNHSFCKEEDDADNNNNDNNGSFHERFLKLPRLESPKSTSLVESQQNNNGYHPIMPEMVGEQVNLVNPLMEASSSSGGLTNWAALDRLVASQLNGQTEVSRHLDCFNIVDSTMGFCSSDHGLQQLPTLRSSSTSSAAHNRANNYISATQDYTFSSEIDLWNFARSTSSLLSSSESLCHVSNTSL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0574 397 FunFam NAC domain-containing protein 20 174 - -
Glsi06g0574 397 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 251 - -
Glsi06g0574 397 ProSiteProfiles NAC domain profile. 11 170 IPR003441 GO:0003677|GO:0006355
Glsi06g0574 397 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Glsi06g0574 397 SUPERFAMILY NAC domain 7 170 IPR036093 GO:0003677|GO:0006355
Glsi06g0574 397 Gene3D NAC domain 20 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0574 Glsi-ChrGlsi06 5329347 5330857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0574 1 396 NAC Transcription Factor Family AT2G46770 55.774 2.95e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi06g0574 NAM 5.2e-36 No_clan