Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0571 ATGATTACTTGGGTTGACGGGTCCGTCATCAATTCTCATCGGGCTGGTTTGTGTGGTGCAGCTCTGAGCAAGCATGCAGTTGGGGGGGGGGTGAGTTTTGAGTTTTGCCAGGAATTTGATCTCCTGCAATGTTACCAACGCAGAGTTATAGGGCATTTTGTCTGCTCTGAATTTAACTTGGACTCGCATTTCCAGATGGTGGGTGGTAACAATCCTGGGCAATACAATGACACAACTTTTACCAAAATCTTTGTTGGAGGGTTAGCTTGGGAGACTCAAAGGGACACAATGAGGAGGTATTTTGAACAGTTTGGGGAGATCCTGGAGGCTGTTGTTATCACGGACAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTTACCTTTAAGGATCCAGAGGCAGCCATGAGAGCATGTCAAAACCCGTCTCCAGTTATTGATGGTCGGAGGGCAAACTGCAACCTTGCATCTCTTGGTGCAAACAAGAATCGTCCTCCAACTCCTCAACATGGTGCAGGACGGTTCAGACCAGCACCTGGACTAGTGGCTACCCCTGCTTATCATAGCTCTTCATCTACATTTTTCCATCAACCCACTGGCCAATACACATATCCTTATTCAGCAGCTTACGGATATTCTGGATATTCACAAGACACCATGTATCCCATGGTAGGTATTTATAACTATTATGGTGTCTATGGAGGTCAACAGTTTTCACCTTACTACCCCTCCACTGGTGCATCTGGGCCACCTGCAGGAGGGTTGATCCATAATATTTACCCTTTCTATACCCAATATGCACAGACGACTCAGGCTCATGGTTTTGGAGTTCAATATCCACAAATGGTACAGTTCCCATTTCTGCCTCAGCACTATGGCTCTACAGGGATCCTGTCATTTCCTTCTTCAATGGCAATGGCAACTACTACCAGTGCAGTTAGCCGCACAGCAAATTGCAGGGAACAAGTCTTCTCCGATCTCTTTTCCTTGAGTGTAAAAATGTCGGCTGGAGAGCTTGCTTGCACCTACGCGACTTTGATCCTCCTCGATGACAATATTCCTGTCACCGCCGAGAAGATCTCAACCTTGGTGAAAGCAGCAAATGTTGAAATTGAATCTTATTGGCCGAGCTTATTTGCTAAACTTGCCGAGAAGCGAAACATTGAGGATCTGATATTAAATGCTGGAGGTGGTGGGGCTCCAGTTGCTGTCGCTGCTCCTGCTGCCGGTGCGGGTGTTGCCGCTCCTGCGGCTGCTCCTCCTCCTGAGGAGAAGAAGAAAGAAGAACCCCAGGAAGAGAGTGATGATGACATGGGCTTCAGCTTGTTTGATTAG 1335 0.4749 MITWVDGSVINSHRAGLCGAALSKHAVGGGVSFEFCQEFDLLQCYQRRVIGHFVCSEFNLDSHFQMVGGNNPGQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTPQHGAGRFRPAPGLVATPAYHSSSSTFFHQPTGQYTYPYSAAYGYSGYSQDTMYPMVGIYNYYGVYGGQQFSPYYPSTGASGPPAGGLIHNIYPFYTQYAQTTQAHGFGVQYPQMVQFPFLPQHYGSTGILSFPSSMAMATTTSAVSRTANCREQVFSDLFSLSVKMSAGELACTYATLILLDDNIPVTAEKISTLVKAANVEIESYWPSLFAKLAEKRNIEDLILNAGGGGAPVAVAAPAAGAGVAAPAAAPPPEEKKKEEPQEESDDDMGFSLFD 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0571 444 CDD Ribosomal_P1 338 394 - -
Glsi06g0571 444 Gene3D - 334 396 IPR038716 -
Glsi06g0571 444 Hamap 50S ribosomal protein L12 [rpl12]. 339 444 IPR027534 GO:0003735|GO:0005840|GO:0006414
Glsi06g0571 444 SUPERFAMILY RNA-binding domain, RBD 72 177 IPR035979 GO:0003676
Glsi06g0571 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 140 IPR000504 GO:0003723
Glsi06g0571 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 158 IPR000504 GO:0003723
Glsi06g0571 444 FunFam 60S acidic ribosomal protein P1 334 396 - -
Glsi06g0571 444 MobiDBLite consensus disorder prediction 413 444 - -
Glsi06g0571 444 Pfam 60s Acidic ribosomal protein 355 443 - -
Glsi06g0571 444 Gene3D - 63 174 IPR012677 -
Glsi06g0571 444 SMART rrm1_1 82 154 IPR000504 GO:0003723
Glsi06g0571 444 PANTHER BOULE-RELATED 64 307 - -
Glsi06g0571 444 CDD RRM_RBM24_RBM38_like 81 156 - -
Glsi06g0571 444 FunFam RNA-binding protein 24-B isoform X1 68 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0571 Glsi-ChrGlsi06 5275078 5283129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0571 334 444 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 59.829 1.28e-37 131