Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0562 ATGGAGAGGCTTCAAGGACCCATCAACTCCTGTTTCTTGGGTGAGCATTTGGAAGTAAACTGTTTAGAGCAAGGTTTCATTGATGCGGAGAGCTTGAGACTTGAGAAAGAAGAGCAACTTTTGATATCAAGCTTAGAGGATAGAATGCCATTTCTTGAGATGCCTCAGAGTGTGGAATCCCCCCAATTTTTCCCCTTCAAAGAGACAAATTTTCAAACACTTCTAAGGCTACAGAACCTAAAGATACCATGGGAAGAAAAATCCCACATACCCACAATGAAGACCCAAATCCAAGTGCTGGAGCTCGAGAGCTGTGTCACCCATGAAAGCAACGACCTTCAATATCCACAATATTCAGCTTCTTGTGCTGAGAAAGTGGGTTTCGAGTGCGATCAAGAACTACCCAAATCAGCTGAAAATTATAACAGAAGTGGTGATGAAGGCTCTATTGCTGCTTGGGCTAGTCCAGTACAATCATGGCCGAAAGAGACCCATTGCCCCAAATATCAGGTGGCTACCAGGGAGCGAAGAAAGAGAAAGAGAACGAGACCAACCAAGAACAAGGAAGATGCGGAGAACCAGCGCATGACCCACATTGCCGTTGAACGCAACCGGCGACGCCAAATGAACGACCACCTCAGTGTTCTAAGGTCCCTCATGCCCCCTTCCTATATTCAAAGGGGTGACCAAGCGTCCGTCATTGGAGGTGCAATAGACTTCGTGAAGGAATTGGAGCAGTTACTTCAATCCCTTGAGGCACGGAAAAGAATGAGGAAAAGCGAAGTTGATTCCAATGGGATTTTCAGACCATATTCGCCTGGTTATGGAATGATGTCTTCTACAGAAGAAGTAAACTTTGGAGAAGAGGTGAAAGCGGAAAACAAGTCAGAGGCAGCAAATATAGAGGTCACTCTGATTCAAAGCCATGTGAACTTGAAAATTCAGTGCCAAAGGAGACCTGGGCAATTGTTAAAAGCCATTGTTGCTATGGAAGATCTCAGACTAACCATTTTGCACCTCAACATAACCTCCTCACAGGCTTCGGTTCTCTACTCTTTCAATCTCAAGATTGAAGATGACTGTAAGCTAGTCTCGGCAAATCAAATTGCGGAAGCAGTTCAACAAATGTTCAGGTTCATTAATGGTAGCTAA 1152 0.4462 MERLQGPINSCFLGEHLEVNCLEQGFIDAESLRLEKEEQLLISSLEDRMPFLEMPQSVESPQFFPFKETNFQTLLRLQNLKIPWEEKSHIPTMKTQIQVLELESCVTHESNDLQYPQYSASCAEKVGFECDQELPKSAENYNRSGDEGSIAAWASPVQSWPKETHCPKYQVATRERRKRKRTRPTKNKEDAENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASVIGGAIDFVKELEQLLQSLEARKRMRKSEVDSNGIFRPYSPGYGMMSSTEEVNFGEEVKAENKSEAANIEVTLIQSHVNLKIQCQRRPGQLLKAIVAMEDLRLTILHLNITSSQASVLYSFNLKIEDDCKLVSANQIAEAVQQMFRFINGS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0562 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 244 IPR011598 GO:0046983
Glsi06g0562 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 264 IPR036638 GO:0046983
Glsi06g0562 383 Pfam Helix-loop-helix DNA-binding domain 194 245 IPR011598 GO:0046983
Glsi06g0562 383 SMART finulus 199 250 IPR011598 GO:0046983
Glsi06g0562 383 Gene3D - 184 261 IPR036638 GO:0046983
Glsi06g0562 383 CDD bHLH_AtFAMA_like 196 261 - -
Glsi06g0562 383 PANTHER TRANSCRIPTION FACTOR FAMA 158 377 IPR044283 GO:0003700|GO:0010052
Glsi06g0562 383 MobiDBLite consensus disorder prediction 170 193 - -
Glsi06g0562 383 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0562 Glsi-ChrGlsi06 5214307 5216138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0562 39 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 43.626 2.69e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi06g0562 HLH 2e-09 No_clan