Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0560 ATGCATCTTCGAACTTCAATCATACTCTCTATTTCTCTGCACATTTCCTTTCTTTTTCTAAGCATTCCGAAAATTCTAATGGCTCCTTCCTTGAAGTCGAACTCAGAAGTCGTCAATGGTGAAGCAAAGCAACTCAAACCTGGGCATGCGGAGGACGAAGACAGCTTCCTCGCCGCCATGCAGTTGACGTCTTCCACTGTGCTGCCCATGGCTCTGCAATCCGCCTTCGAGCTCGGCGTCTTCGACGCCATAGCCAAAGCAGGTGAAGGTGCGAAGCTCTCTGCGAAGGACATTGCTGATTTGATTTCCAGCAAGAACCCAGAAGCACCTACCATGCTTGATCGTGTTCTCAGGCTTCTGGCTAGCCACTCTGTGCTTCATTGCTGTGTTCTTGATGATCCTCAAGGGAAACAGAGGCTCTACAGTCTCTCCCCTGTTTCCAAATATTTCGTCACTAATGATGACGGTGTGTCTTGTGGACCTCTTTTGGCCTTGATTCAAGACAAGGTCTTCTTGGATAGTTGGAGCCAACTGAAAGGTGCAATAATGGAAGGAGGGATACCATTCAATAGGGTTTACGGGATGCATGCCTTTGAGTACCCAAGCTTGGACCCCAGGTTCAATGAGGTTTTCAACAAAGCTATGTACAACTCCACGATTTTGATTATGAAGAAGATTCTGGAATTCTACAAGGGTTTTGAGAGCATCAACAAAAAACTGGTGGATGTTGGTGGTGGTCTTGGTGTCAACCTTAAATTGATCACTTCCAAATATCCTCATGTTCAGGGAATTAACTTTGACTTGCCTCACGTCATAGAACATACCCCTAACTACCCTGGTGTTGAACATGTCGGAGGAGATATGTTTCAAAGTGTTCCTCAAGGAGATGCCGTCTTTATGAAGTGGATTCTTCATGATTGGAGCGATGAACATTGCTTGAAACTGTTAAAGAATTGCTACAAGGCGATTCCTGACGATGGAAAAGTGATTGTTGTGGAATCAATTCTTCCCACGGAGCCTGAGACTCATACTGCTGTGAAGACTGCTTTTCAAGGTGATGTCCTAATGATGACCCAAAACCCAGGAGGCAAAGAACGAACTCAAGAAGAGTTCATGGAATTGGCAACATCAGCTGGATTTAGTGGTATCAGATTCGTCTGTCAAGTATGTGGCTTCTGGGTTATGGAGTTCTTCAAGTAG 1200 0.4525 MHLRTSIILSISLHISFLFLSIPKILMAPSLKSNSEVVNGEAKQLKPGHAEDEDSFLAAMQLTSSTVLPMALQSAFELGVFDAIAKAGEGAKLSAKDIADLISSKNPEAPTMLDRVLRLLASHSVLHCCVLDDPQGKQRLYSLSPVSKYFVTNDDGVSCGPLLALIQDKVFLDSWSQLKGAIMEGGIPFNRVYGMHAFEYPSLDPRFNEVFNKAMYNSTILIMKKILEFYKGFESINKKLVDVGGGLGVNLKLITSKYPHVQGINFDLPHVIEHTPNYPGVEHVGGDMFQSVPQGDAVFMKWILHDWSDEHCLKLLKNCYKAIPDDGKVIVVESILPTEPETHTAVKTAFQGDVLMMTQNPGGKERTQEEFMELATSAGFSGIRFVCQVCGFWVMEFFK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0560 399 Pfam O-methyltransferase domain 175 381 IPR001077 GO:0008171
Glsi06g0560 399 SUPERFAMILY "Winged helix" DNA-binding domain 51 153 IPR036390 -
Glsi06g0560 399 PANTHER O-METHYLTRANSFERASE 59 385 IPR016461 GO:0008168
Glsi06g0560 399 FunFam Caffeic acid O-methyltransferase 151 399 - -
Glsi06g0560 399 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 156 397 IPR029063 -
Glsi06g0560 399 Pfam Dimerisation domain 70 121 IPR012967 GO:0046983
Glsi06g0560 399 Gene3D Vaccinia Virus protein VP39 151 399 IPR029063 -
Glsi06g0560 399 PIRSF O-mtase 39 399 IPR016461 GO:0008168
Glsi06g0560 399 Gene3D - 38 150 IPR036388 -
Glsi06g0560 399 FunFam Caffeic acid 3-O-methyltransferase 38 150 - -
Glsi06g0560 399 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 60 399 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0560 Glsi-ChrGlsi06 5198942 5201127 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0560 44 399 Monolignol Biosynthesis Gene Families AT5G54160 56.022 1.81e-148 423